PyMC educational resources

A python tutorial on bayesian modeling techniques (PyMC3)

Manipulate KEGG networks as NetworkX objects in in Python

Fast facebook activity deletion

Automatic layout of labels for features in a plot.

Pure python scripts to make sashimi plots

Dorothea package in Python

Draws Manhattan plot and QQ plot using plink assoc output.

A set of data tools in Python

eQTL Catalogue Summary Statistics

Ultrafast GPU-enabled QTL mapper

Processed Cell Painting Data for the LINCS Drug Repurposing Project

Python package for processing image-based profiling data

List of software packages for multi-omics analysis

Prize-Collecting Steiner Forests for Interactomes

A list of useful bioinformatics resources

BAyesian Model-Building Interface (Bambi) in Python.

ChIP-seq analysis notes from Ming Tang

An index of algorithms for learning causality with data

An Alfred workflow for setting daily notes in Roam, including a retrospective space

Jupyter notebooks for CellProfiler and friends

Attempt at phillip rewrite in rllib. Also attempts at training from slippi replays.

Python library for parsing SSBM replay files

Robust Allele Specific Quantification and quality controL

Performant Pythonic GenomicRanges

Cytoscape.js based network visualizer for Jupyter Notebook

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

Jupyter notebook based genomic data visualization toolkit.

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data