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Tags: hyeshik/tailseeker

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v3.2.1

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Bump version to 3.2.1

v3.2

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Bump conda package version to 3.2

v3.1.9

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hyeshik Hyeshik Chang
Release 3.1.9

 - Adds a conda package

v3.1.8

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hyeshik Hyeshik Chang
Release 3.1.8

 - Added support for conda.

v3.1.7

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hyeshik Hyeshik Chang
Changes in tailseeker 3.1.7

 * Fix the docker wrapper script to take up the environment variable
   TAILSEEKER_REFDBDIR correctly.
 * Remove U3 and 7SL RNAs from contaminant database pipeline.
 * Fix the compatibility issue with recent versions of snakemake.
 * Add support for MiSeq v3 chemistry.
 * Fix a crash issue in tailseq-dedup-perfect when it fails if
   more than 1024 alignments with less optimal TAIL-seq signals
   are followed after an alignment with better signals.
 * Fix a problem in plotting a virtual gel with recent versions of
   pandas.

v3.1.6

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hyeshik Hyeshik Chang
Changes in tailseeker 3.1.6

 - Fix an issue on approximate duplicate matching that
   wrong tags are randomly discarded due to the uninitialized
   memory.

v3.1.5

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hyeshik Hyeshik Chang
Changes in tailseeker 3.1.5:

 - Fix building *Xenopus laevis* genome reference database.
 - Fix running pipeline using Docker by unset environment variable.
 - Fix building on macOS.

v3.1.4

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hyeshik Hyeshik Chang
Tailseeker 3.1.4 is released.

Changes:
 - IUPAC degenerate bases are now accepted inside the
   delimiter sequence.
 - External calls are now more adaptive when installed
   with a full-bundle binary package. PATH and
   LD_LIBRARY_PATH are set and handed over to the subprocess
   commands.

v3.1.3

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hyeshik Hyeshik Chang
Tailseeker 3.1.3 fixes reference database building with newer version…

… of bedtools.

v3.1.2

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hyeshik Hyeshik Chang
A few bugs are fixed.