Creating beautiful plots of data maps

Population-scale genomics

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

ENCODE ATAC-seq pipeline

Analysis of convergence between organismal traits and DNA/protein sequences

Phylogenetic analysis in R

R package constellatoR to check functional convergence in long lists of Gene Ontology terms and orthogroups

General tools for genomic analyses.

Bioinformatics code libraries and scripts

Official home of genome aligner based upon notion of Cactus graphs

tomato graph pangenome

SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension

alignment to variation graph inducer

Visualization and annotation of CNVs from population-scale whole-genome sequencing data

Config files for my GitHub profile.

Human pan-genome analysis pipeline

Population-scale genotyping using pangenome graphs

A flexible framework for rapid genome analysis and interpretation

镜像：https://coding.net/u/scaffrey/p/hosts/git

Python - 100天从新手到大师

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

CN-Learn

Performant Pythonic GenomicRanges

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Draw a flow chart with vue and jsplumb

lumpy: a general probabilistic framework for structural variant discovery

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.