Stars
MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.
QuPath - Open-source bioimage analysis for research
Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a time series with two and more conditions.
Code to facilitate translation of QuPath annotations to LMD compatible contours
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
PCAtools: everything Principal Components Analysis
AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
LaTeX template for an Oxford University thesis
AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
Open source code for AlphaFold.
📊 A universal enrichment tool for interpreting omics data
Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.