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A comprehensive library for computational molecular biology

Python 610 98 Updated Sep 15, 2024

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

Python 216 41 Updated Jul 27, 2024

The consensus GEM for Saccharomyces cerevisiae

MATLAB 94 43 Updated Aug 26, 2024

bioBakery tools for meta'omic profiling

Shell 254 73 Updated Sep 14, 2024

HyPhy: Hypothesis testing using Phylogenies

HyPhy 206 69 Updated Sep 14, 2024

COBRApy is a package for constraint-based modeling of metabolic networks.

Python 460 216 Updated Sep 4, 2024

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

Python 327 87 Updated Aug 1, 2019

Graph and network visualization using tabular data in R

R 1,693 248 Updated Aug 13, 2024

code for the yeast manuscript

R 1 2 Updated Apr 27, 2018

Data and code for yeast-GEM update

R 2 1 Updated May 16, 2019