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Norwegian Veterinary Institute
- Ås
- https://www.researchgate.net/profile/Hakon_Kaspersen2
- @HakonKaspersen
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nvi-documentation Public
Forked from NorwegianVeterinaryInstitute/nvi-documentationTutorial page for NVI
UpdatedOct 4, 2023 -
taxprofiler Public
Forked from nf-core/taxprofilerHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Nextflow MIT License UpdatedOct 1, 2023 -
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action-get-latest-tag Public
Forked from actions-ecosystem/action-get-latest-tag✨ GitHub Action to get a latest Git tag
Shell Apache License 2.0 UpdatedNov 29, 2022 -
bacass Public
Forked from nf-core/bacassSimple bacterial assembly and annotation pipeline
Nextflow MIT License UpdatedOct 4, 2022 -
nf-gwas-pipeline Public
Forked from montilab/nf-gwas-pipelineA Nextflow Genome-Wide Association Study (GWAS) Pipeline
R GNU General Public License v3.0 UpdatedFeb 7, 2022 -
impoRt Public
R package for importing data from multiple files and folders
R Other UpdatedJan 23, 2022 -
distanceR Public
R package for calculating distances from cgMLST allele data and annotating dendrograms
R Other UpdatedAug 4, 2021 -
Ellipsis Public
Forked from NorwegianVeterinaryInstitute/EllipsisNextflow BSD 3-Clause "New" or "Revised" License UpdatedAug 2, 2021 -
misc-scripts Public
Miscellaneous small scripts
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VAMPIR Public
Tool for analysing reports for Antimicrobial resistance and virulence genes, plasmid types and multilocus sequence typing data
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hkaspersen_thesis Public
Repository for PhD Thesis of Håkon Kaspersen
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qm_wgs_4species Public
Forked from NorwegianVeterinaryInstitute/qm_wgs_4speciesHTML BSD 3-Clause "New" or "Revised" License UpdatedNov 17, 2019 -
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BioinfTraining Public
Forked from NorwegianVeterinaryInstitute/BioinfTrainingRepository for bioinformatics training at the Norwegian Veterinary Institute
Shell UpdatedApr 26, 2019 -
Delicious Public
Forked from NorwegianVeterinaryInstitute/DeliciousShare your recipes - version control your recipes. I suspect most of the practical version control will be focused on cakes. But other recipes are welcome, particularly if they are excellent and ta…
UpdatedApr 9, 2019 -
PD-project Public
R Project for analysis of pancreas disease in fish in Norway
R BSD 3-Clause "New" or "Revised" License UpdatedDec 6, 2018 -
ARIBA_analysis Public
R script for analysis of ARIBA report files
R BSD 3-Clause "New" or "Revised" License UpdatedNov 26, 2018 -
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fastqc_analysis Public
R script for analysis of fastqc reports
R BSD 3-Clause "New" or "Revised" License UpdatedAug 16, 2018 -
Quast_reporting Public
R Script for reporting quast results on assemblies
R BSD 3-Clause "New" or "Revised" License UpdatedAug 14, 2018 -
RaukR-2018-Notes Public
Notes and data from RaukR Course 2018
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vetmic2018 Public
Code accompanying Kaspersen et al. 2018 article in Veterinary Microbiology
BSD 3-Clause "New" or "Revised" License UpdatedJun 13, 2018 -
organizational Public
Forked from NorwegianVeterinaryInstitute/organizationalRepo with useful inof
UpdatedMay 25, 2018 -
gyrA_mut_analysis Public
R script for mutation analysis of E. coli gyrA gene with .fasta files
BSD 3-Clause "New" or "Revised" License UpdatedFeb 22, 2018