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Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
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  • nvi-documentation Public

    Forked from NorwegianVeterinaryInstitute/nvi-documentation

    Tutorial page for NVI

    Updated Oct 4, 2023

  • taxprofiler Public

    Forked from nf-core/taxprofiler

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Nextflow MIT License Updated Oct 1, 2023

  • KG-VET_Quantification Public

    R BSD 3-Clause "New" or "Revised" License Updated Dec 5, 2022

  • action-get-latest-tag Public

    Forked from actions-ecosystem/action-get-latest-tag

    ✨ GitHub Action to get a latest Git tag

    Shell Apache License 2.0 Updated Nov 29, 2022

  • bacass Public

    Forked from nf-core/bacass

    Simple bacterial assembly and annotation pipeline

    Nextflow MIT License Updated Oct 4, 2022

  • nf-gwas-pipeline Public

    Forked from montilab/nf-gwas-pipeline

    A Nextflow Genome-Wide Association Study (GWAS) Pipeline

    R GNU General Public License v3.0 Updated Feb 7, 2022

  • impoRt Public

    R package for importing data from multiple files and folders

    R Other Updated Jan 23, 2022

  • distanceR Public

    R package for calculating distances from cgMLST allele data and annotating dendrograms

    R Other Updated Aug 4, 2021

  • Ellipsis Public

    Forked from NorwegianVeterinaryInstitute/Ellipsis
    Nextflow BSD 3-Clause "New" or "Revised" License Updated Aug 2, 2021

  • misc-scripts Public

    Miscellaneous small scripts

    R 2 BSD 3-Clause "New" or "Revised" License Updated Oct 22, 2020

  • bash_scripts Public

    Shell BSD 3-Clause "New" or "Revised" License Updated Oct 19, 2020

  • funtools Public

    R 1 Updated Oct 13, 2020

  • VAMPIR Public

    Tool for analysing reports for Antimicrobial resistance and virulence genes, plasmid types and multilocus sequence typing data

    R 1 BSD 3-Clause "New" or "Revised" License Updated Oct 2, 2020

  • vampfunc Public

    R Updated Apr 28, 2020

  • hkaspersen_thesis Public

    Repository for PhD Thesis of Håkon Kaspersen

    R 1 BSD 3-Clause "New" or "Revised" License Updated Dec 4, 2019

  • qm_wgs_4species Public

    Forked from NorwegianVeterinaryInstitute/qm_wgs_4species
    HTML BSD 3-Clause "New" or "Revised" License Updated Nov 17, 2019

  • iteRate Public

    R MIT License Updated Jun 14, 2019

  • BioinfTraining Public

    Forked from NorwegianVeterinaryInstitute/BioinfTraining

    Repository for bioinformatics training at the Norwegian Veterinary Institute

    Shell Updated Apr 26, 2019

  • Delicious Public

    Forked from NorwegianVeterinaryInstitute/Delicious

    Share your recipes - version control your recipes. I suspect most of the practical version control will be focused on cakes. But other recipes are welcome, particularly if they are excellent and ta…

    Updated Apr 9, 2019

  • PD-project Public

    R Project for analysis of pancreas disease in fish in Norway

    R BSD 3-Clause "New" or "Revised" License Updated Dec 6, 2018

  • ARIBA_analysis Public

    R script for analysis of ARIBA report files

    R BSD 3-Clause "New" or "Revised" License Updated Nov 26, 2018

  • qrec_wgs1 Public

    HTML BSD 3-Clause "New" or "Revised" License Updated Oct 12, 2018

  • fastqc_analysis Public

    R script for analysis of fastqc reports

    R BSD 3-Clause "New" or "Revised" License Updated Aug 16, 2018

  • Quast_reporting Public

    R Script for reporting quast results on assemblies

    R BSD 3-Clause "New" or "Revised" License Updated Aug 14, 2018

  • RaukR-2018-Notes Public

    Notes and data from RaukR Course 2018

    HTML 1 1 BSD 3-Clause "New" or "Revised" License Updated Jun 20, 2018

  • vetmic2018 Public

    Code accompanying Kaspersen et al. 2018 article in Veterinary Microbiology

    BSD 3-Clause "New" or "Revised" License Updated Jun 13, 2018

  • organizational Public

    Forked from NorwegianVeterinaryInstitute/organizational

    Repo with useful inof

    Updated May 25, 2018

  • gyrA_mut_analysis Public

    R script for mutation analysis of E. coli gyrA gene with .fasta files

    BSD 3-Clause "New" or "Revised" License Updated Feb 22, 2018