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Issues list

different behavior for bed or bed.gz on bed_to_multivec
#47 opened Jan 30, 2019 by burakalver
clodius aggregate bedgraph requires the same sorting order in .bedgraph and negspy's chromOrder/chromInfo
#14 opened Sep 19, 2017 by golobor
Add information about the files clodius produces to the README
#16 opened Oct 26, 2017 by pkerpedjiev
Error Clodius aggregate: RuntimeError: Invalid interval bounds!
#18 opened Feb 1, 2018 by samuelCollombet
1
libcurl-devel is required for install
#19 opened Feb 21, 2018 by aakashsur
Warning from h5py
#20 opened Feb 21, 2018 by aakashsur
installation issue with python3.6 in conda
#21 opened Mar 18, 2018 by sergpolly
5
aggregate bedpe memory issue
#22 opened Mar 22, 2018 by dumbodrop
clodius aggregate: NameError: global name '_bigwig' is not defined
#28 opened May 13, 2018 by dvera
9
error installation
#32 opened Sep 13, 2018 by egenomics
5
h5py KeyError exception with clodius 0.9.4
#35 opened Nov 2, 2018 by alexpreynolds
Introduce dataframe file type to replace / supplement beddb and bed2ddb feature
#37 opened Nov 11, 2018 by pkerpedjiev
2
Are all tiles guaranteed to be saved to Elastic? question
#3 opened Jul 30, 2016 by ngehlenborg
@pkerpedjiev
1
aggregate bedpe not working when output file is not specified
#40 opened Nov 27, 2018 by flekschas
docker run example in README does not work for me
#51 opened Apr 12, 2019 by mccalluc
Validate mrmatrix on load enhancement
#61 opened Apr 19, 2019 by mccalluc
mrmatrix: coarsen should create nan_values at each resolution? enhancement
#62 opened Apr 19, 2019 by mccalluc
1
Add tsv_to_mrmatrix to exports feature
#65 opened Apr 19, 2019 by mccalluc
Keep clodius docs under clodius feature
#66 opened Apr 19, 2019 by mccalluc
Support bounds for mrmatrix feature
#67 opened Apr 19, 2019 by mccalluc
tiff -> mrmatrix? question
#72 opened Apr 22, 2019 by mccalluc
@pkerpedjiev
bigwig_test.py fails with "numpy.ufunc size changed" bug
#79 opened May 21, 2019 by mccalluc
1
turn on test_bedarcsdb_tiles1? question
#84 opened May 21, 2019 by mccalluc
Clodius aggregate with new assembly
#87 opened May 24, 2019 by gibcus
3
Pandas FutureWarning: Series.__getitem__ deprecation warning
#152 opened Apr 18, 2024 by manzt
2
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