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aggregate bedpe not working when output file is not specified #40

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flekschas opened this issue Nov 27, 2018 · 0 comments
Open

aggregate bedpe not working when output file is not specified #40

flekschas opened this issue Nov 27, 2018 · 0 comments

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@flekschas
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According to the help text

  -o, --output-file TEXT      The default output file name to use. If this
                              isn'tspecified, clodius will replace the current
                              extensionwith .bed2db

but when I do

clodius aggregate bedpe -a hg38 --has-header outrageously-awesome-stuff.bedpe

I only see

output_file: None
plain

while I would expect get

outrageously-awesome-stuff.bed2ddb

but instead I get

outrageously-awesome-stuff.bedpe.multires.db

therefore I am

🤔
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