Update legacy repo links to hetio/hetionet

hetnet/neo4j/README.md

@@ -17,7 +17,7 @@ if [ -d "graph.db" ]; then
 fi
 
 # Download and extract graph.db for Hetionet v1.0
-curl --location https://github.com/dhimmel/hetionet/raw/master/hetnet/neo4j/hetionet-v1.0.db.tar.bz2 | tar --extract --bzip2
+curl --location https://github.com/hetio/hetionet/raw/master/hetnet/neo4j/hetionet-v1.0.db.tar.bz2 | tar --extract --bzip2
 ```
 
 If curl throws an error related to SSL or certificates, you can add the `--insecure` argument to `curl` to allow connections to SSL sites without certs.

hetnet/neo4j/docker/guides/hetionet.adoc

@@ -13,7 +13,7 @@
 
 Hetionet is a network of biology, disease, and pharmacology. Knowledge from millions of biomedical studies over the last half century have been encoded into a single hetnet. Version 1.0 contains 47,031 nodes of 11 types and 2,250,197 relationships of 24 types.
 
-We created link:https://github.com/dhimmel/hetionet[Hetionet] v1.0 for link:https://doi.org/bszr[Project Rephetio] (link:https://doi.org/10.7554/eLife.26726[publication]) — where we systematically looked at why drugs work and predicted new uses for existing drugs.
+We created link:https://github.com/hetio/hetionet[Hetionet] v1.0 for link:https://doi.org/bszr[Project Rephetio] (link:https://doi.org/10.7554/eLife.26726[publication]) — where we systematically looked at why drugs work and predicted new uses for existing drugs.
 
 ++++
 </div>

hetnet/neo4j/docker/guides/hetionet.html

@@ -58,7 +58,7 @@ <h4>Hetionet v1.0</h4>
 <p>Hetionet is a network of biology, disease, and pharmacology. Knowledge from millions of biomedical studies over the last half century have been encoded into a single hetnet. Version 1.0 contains 47,031 nodes of 11 types and 2,250,197 relationships of 24 types.</p>
 </div>
 <div class="paragraph">
-<p>We created <a href="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/dhimmel/hetionet">Hetionet</a> v1.0 for <a href="https://doi.org/bszr">Project Rephetio</a> (<a href="https://doi.org/10.7554/eLife.26726">publication</a>) — where we systematically looked at why drugs work and predicted new uses for existing drugs.</p>
+<p>We created <a href="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/hetio/hetionet">Hetionet</a> v1.0 for <a href="https://doi.org/bszr">Project Rephetio</a> (<a href="https://doi.org/10.7554/eLife.26726">publication</a>) — where we systematically looked at why drugs work and predicted new uses for existing drugs.</p>
 </div>
 </div>
 <div class="col-lg-3 ng-scope">

hetnet/neo4j/docker/host/README.md

@@ -21,5 +21,5 @@ SSL renewal can be scheduled to execute every fortnight (1st and 16th of each mo
 You can download the contents of this directory from GitHub to the current working directory, using subversion:
 
 ```sh
-svn export --force https://github.com/dhimmel/hetionet.git/trunk/hetnet/neo4j/docker/host/ .
+svn export --force https://github.com/hetio/hetionet.git/trunk/hetnet/neo4j/docker/host/ .
 ```

hetnet/neo4j/docker/scripts/get_data.sh

@@ -8,7 +8,7 @@ cd /data
 mkdir -p databases
 if [ ! -d "databases/graph.db" ]; then
  echo "Downloading and extracting database"
- DB_URL="https://github.com/dhimmel/hetionet/raw/e319b1b50639b845a35e31fbc16afcbe9b8c2dfd/hetnet/neo4j/hetionet-v1.0.db.tar.bz2"
+ DB_URL="https://github.com/hetio/hetionet/raw/e319b1b50639b845a35e31fbc16afcbe9b8c2dfd/hetnet/neo4j/hetionet-v1.0.db.tar.bz2"
  curl --silent --location $DB_URL | tar --extract --bzip2 --directory=databases
 else
  echo "Not retrieving database as it already exists"

hetnet/permuted/neo4j/README.md

@@ -1,3 +1,3 @@
 # Permuted hetnets for Neo4j
 
-The permuted hetnets are currently only available for Neo4j 2.3. Please see the [2.3 branch](https://github.com/dhimmel/hetionet/tree/neo4j-2.3/hetnet/permuted/neo4j) for access to the Neo4j-database-formatted permuted networks.
+The permuted hetnets are currently only available for Neo4j 2.3. Please see the [2.3 branch](https://github.com/hetio/hetionet/tree/neo4j-2.3/hetnet/permuted/neo4j) for access to the Neo4j-database-formatted permuted networks.

import.ipynb

@@ -6,7 +6,7 @@
  "source": [
  "# Import hetionet from `dhimmel/integrate`\n",
  "\n",
- "[`dhimmel/integrate`](https://github.com/dhimmel/integrate) performs the data integration, creation, permutation, and neo4j export for v1.0 of hetionet. This repository (`dhimmel/hetionet`) hosts only the completed hetnets and network descriptions. This notebook copies files from `dhimmel/integrate`, some on the GitHub and some created locally, to populate `dhimmel/hetionet`."
+ "[`dhimmel/integrate`](https://github.com/dhimmel/integrate) performs the data integration, creation, permutation, and neo4j export for v1.0 of hetionet. This repository (`hetio/hetionet`) hosts only the completed hetnets and network descriptions. This notebook copies files from `dhimmel/integrate`, some on the GitHub and some created locally, to populate `hetio/hetionet`."
  ]
  },
  {