Upgrade Neo4j to 3.2.3-enterprise

neo4j-guide-extension-3.2.3.jar was built using `mvn clean install` from
dhimmel/neo4j-guides@fa0cb4c

Required neo4j-guides tweak. See
neo4j-contrib/neo4j-guides#14
neo4j-contrib/neo4j-guides#15

Explicitly install curl, which appears to not be included by default
anymore.

hetnet/neo4j/docker/Dockerfile

@@ -1,17 +1,18 @@
-FROM neo4j:3.1.4
+FROM neo4j:3.2.3-enterprise
 MAINTAINER Daniel Himmelstein, <[email protected]>
 
 COPY scripts /
 RUN chmod +x /get_data_run_neo4j.sh
 
 COPY files/neo4j.conf /var/lib/neo4j/conf/
 COPY files/piwik.html /
-COPY files/neo4j-guide-extension-3.0.1.jar /var/lib/neo4j/plugins
+COPY files/neo4j-guide-extension-3.2.3.jar /var/lib/neo4j/plugins
 COPY guides /guides
 
 # Update or install packages
 RUN apk add --no-cache --quiet \
  bzip2 \
+ curl \
  tar \
  zip
 
@@ -24,7 +25,7 @@ RUN cd /var/lib/neo4j/lib && \
  JAR_PATH=`ls neo4j-browser-*` && \
  HTML_PATH=browser/index.html && \
  unzip $JAR_PATH $HTML_PATH && \
- OLD='<title ng-bind-template="Neo4j {{titlebarString}}">Neo4j</title>' && \
+ OLD='<title>Neo4j Browser</title>' && \
  NEW='<title>Hetionet · Neo4j Browser</title>' && \
  sed --in-place "s|$OLD|$NEW|" $HTML_PATH && \
  OLD='<meta name="description" content="Neo4j Browser">' && \

hetnet/neo4j/docker/README.md

@@ -11,7 +11,7 @@ The contents of this repository are mostly included in the Docker image. However
 Build the image using the following command:
 
 ```sh
-TAG="dhimmel/hetionet:hetionet-v1.0_neo4j-3.1.4"
+TAG="dhimmel/hetionet:hetionet-v1.0_neo4j-3.2.3"
 docker build --tag dhimmel/hetionet:latest --tag $TAG --file Dockerfile .
 ```
 
@@ -24,6 +24,7 @@ To run the image on a local system, (development or local usage) run the followi
 ```sh
 docker run \
  --name=hetionet-container \
+ --rm \
  --publish=7474:7474 \
  --publish=7687:7687 \
  --volume=$HOME/neo4j/hetionet-data:/data \

hetnet/neo4j/docker/files/neo4j.conf

@@ -1,15 +1,16 @@
 #*****************************************************************
 # Neo4j configuration
+#
+# For more details and a complete list of settings, please see
+# https://neo4j.com/docs/operations-manual/current/reference/configuration-settings/
 #*****************************************************************
 
 # The name of the database to mount
 dbms.active_database=graph.db
 
-# Paths of directories in the installation.
-
-# This setting constrains all `LOAD CSV` import files to be under the `import` directory. Remove or uncomment it to
-# allow files to be loaded from anywhere in filesystem; this introduces possible security problems. See the `LOAD CSV`
-# section of the manual for details.
+# This setting constrains all `LOAD CSV` import files to be under the `import` directory. Remove or comment it out to
+# allow files to be loaded from anywhere in the filesystem; this introduces possible security problems. See the
+# `LOAD CSV` section of the manual for details.
 dbms.directories.import=import
 
 # Whether requests to Neo4j are authenticated.
@@ -19,31 +20,114 @@ dbms.security.auth_enabled=false
 # Enable this to be able to upgrade a store from an older version.
 dbms.allow_format_migration=true
 
-
 #*****************************************************************
 # Network connector configuration
 #*****************************************************************
 
+# With default configuration Neo4j only accepts local connections.
+# To accept non-local connections, uncomment this line:
+dbms.connectors.default_listen_address=0.0.0.0
+
+# You can also choose a specific network interface, and configure a non-default
+# port for each connector, by setting their individual listen_address.
+
+# The address at which this server can be reached by its clients. This may be the server's IP address or DNS name, or
+# it may be the address of a reverse proxy which sits in front of the server. This setting may be overridden for
+# individual connectors below.
+#dbms.connectors.default_advertised_address=localhost
+
+# You can also choose a specific advertised hostname or IP address, and
+# configure an advertised port for each connector, by setting their
+# individual advertised_address.
+
 # Bolt connector
-dbms.connector.bolt.type=BOLT
 dbms.connector.bolt.enabled=true
-dbms.connector.bolt.tls_level=OPTIONAL
-# To have Bolt accept non-local connections, uncomment this line
-dbms.connector.bolt.address=0.0.0.0:7687
+#dbms.connector.bolt.tls_level=OPTIONAL
+#dbms.connector.bolt.listen_address=:7687
 
-# HTTP Connector
-dbms.connector.http.type=HTTP
+# HTTP Connector. There must be exactly one HTTP connector.
 dbms.connector.http.enabled=true
-#dbms.connector.http.encryption=NONE
-# To have HTTP accept non-local connections, uncomment this line
-dbms.connector.http.address=0.0.0.0:7474
+#dbms.connector.http.listen_address=:7474
 
-# HTTPS Connector
-dbms.connector.https.type=HTTP
+# HTTPS Connector. There can be zero or one HTTPS connectors.
 dbms.connector.https.enabled=true
-dbms.connector.https.encryption=TLS
-dbms.connector.https.address=localhost:7473
+#dbms.connector.https.listen_address=:7473
+
+# Number of Neo4j worker threads.
+#dbms.threads.worker_count=
+
+#*****************************************************************
+# Logging configuration
+#*****************************************************************
+
+# To enable HTTP logging, uncomment this line
+dbms.logs.http.enabled=true
+
+# Number of HTTP logs to keep.
+#dbms.logs.http.rotation.keep_number=5
+
+# Size of each HTTP log that is kept.
+#dbms.logs.http.rotation.size=20m
+
+# To enable GC Logging, uncomment this line
+#dbms.logs.gc.enabled=true
+
+# GC Logging Options
+# see https://docs.oracle.com/cd/E19957-01/819-0084-10/pt_tuningjava.html#wp57013 for more information.
+#dbms.logs.gc.options=-XX:+PrintGCDetails -XX:+PrintGCDateStamps -XX:+PrintGCApplicationStoppedTime -XX:+PrintPromotionFailure -XX:+PrintTenuringDistribution
+
+# Number of GC logs to keep.
+#dbms.logs.gc.rotation.keep_number=5
+
+# Size of each GC log that is kept.
+#dbms.logs.gc.rotation.size=20m
+
+# Size threshold for rotation of the debug log. If set to zero then no rotation will occur. Accepts a binary suffix "k",
+# "m" or "g".
+#dbms.logs.debug.rotation.size=20m
+
+# Maximum number of history files for the internal log.
+#dbms.logs.debug.rotation.keep_number=7
 
+# Log executed queries that takes longer than the configured threshold. Enable by uncommenting this line.
+dbms.logs.query.enabled=true
+
+# If the execution of query takes more time than this threshold, the query is logged. If set to zero then all queries
+# are logged.
+dbms.logs.query.threshold=0
+
+# The file size in bytes at which the query log will auto-rotate. If set to zero then no rotation will occur. Accepts a
+# binary suffix "k", "m" or "g".
+#dbms.logs.query.rotation.size=20m
+
+# Maximum number of history files for the query log.
+#dbms.logs.query.rotation.keep_number=7
+
+# Include parameters for the executed queries being logged (this is enabled by default).
+dbms.logs.query.parameter_logging_enabled=true
+
+# Uncomment this line to include detailed time information for the executed queries being logged:
+dbms.logs.query.time_logging_enabled=true
+
+# Uncomment this line to include bytes allocated by the executed queries being logged:
+dbms.logs.query.allocation_logging_enabled=true
+
+# Uncomment this line to include page hits and page faults information for the executed queries being logged:
+dbms.logs.query.page_logging_enabled=true
+
+# The security log is always enabled when `dbms.security.auth_enabled=true`, and resides in `logs/security.log`.
+
+# Log level for the security log. One of DEBUG, INFO, WARN and ERROR.
+#dbms.logs.security.level=INFO
+
+# Threshold for rotation of the security log.
+#dbms.logs.security.rotation.size=20m
+
+# Minimum time interval after last rotation of the security log before it may be rotated again.
+#dbms.logs.security.rotation.delay=300s
+
+# Maximum number of history files for the security log.
+#dbms.logs.security.rotation.keep_number=7
 
 #*****************************************************************
 # Miscellaneous configuration
@@ -57,19 +141,13 @@ dbms.read_only=true
 dbms.transaction.timeout=120s
 
 # Enable remote content (guides) from anywhere
+# In Neo4j 3.2.1, only available in enterprise
 browser.remote_content_hostname_whitelist=*
 
 # Configure the guide-extension
 # https://github.com/jexp/neo4j-guides/tree/master/guide-extension
 dbms.unmanaged_extension_classes=extension.web=/guides
 org.neo4j.server.guide.directory=data/guides
 
-# Enable query logging (enterprise only so currently inactive)
-dbms.logs.query.enabled=true
-dbms.logs.query.parameter_logging_enabled=true
-dbms.logs.query.rotation.keep_number=10
-dbms.logs.query.rotation.size=1M
-dbms.logs.query.threshold=0
-
 # Autoplay the Hetionet guide
 browser.post_connect_cmd=play https://neo4j.het.io/guides/hetionet.html