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Starred repositories
Official implementation of "MediCLIP: Adapting CLIP for Few-shot Medical Image Anomaly Detection (MICCAI 2024 Early Accept)"
A vision-language foundation model for computational pathology - Nature Medicine
This repo provides the pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
Hyperbolic Graph Convolutional Networks in PyTorch.
AI-based differential diagnosis of dementia etiologies on multimodal data
Multimodal deep learning for Alzheimer's disease dementia assessment
mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images
Harmonization of multi-site imaging data with ComBat
Harmonization of multi-site imaging data with ComBat (Python)
Paper list about hyperbolic embedding, hyperbolic models,hyperbolic applications
Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
Clinical Histopathology Imaging Evaluation Foundation Model
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Spatial alignment of single cell transcriptomic data.
Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to ex…
ADer (https://arxiv.org/abs/2406.03262) is an open source visual anomaly detection toolbox based on PyTorch, which supports multiple popular AD datasets and approaches.
Code for the ProteinMPNN paper
[NeurIPS 2024] Official implementation of MambaAD: Exploring State Space Models for Multi-class Unsupervised Anomaly Detection.
Official repo for "Mini-Gemini: Mining the Potential of Multi-modality Vision Language Models"