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Adjust requirements #26

Adjust requirements

Adjust requirements #26

Workflow file for this run

name: CI Pipeline
on: [push]
jobs:
build:
runs-on: ubuntu-latest
timeout-minutes: 60
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: setup python
uses: actions/setup-python@v2
with:
python-version: 3.11 #install the python needed
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements-dev.txt
pip install .
# First download before tests as they make use of the downloaded files
- name: Download all files
run: |
python ci/download_all.py
- name: Execute unittests
run: |
pytest ci/
- name: Execute scGPT
run: |
python examples/run_scgpt.py
- name: Execute Geneformer
run: |
python examples/run_geneformer.py
- name: Execute UCE
run: |
python examples/run_uce.py
- name: Execute Hyena
run: |
python examples/run_hyena_dna.py