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HAPI FHIR Dependency Bumps #5576

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merged 28 commits into from
Jan 14, 2024
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1691b50
HAPI FHIR Dependency Bumps
jamesagnew Jan 2, 2024
6d34af6
Hibernate search 6
jamesagnew Jan 2, 2024
284f7db
Dep bumps
jamesagnew Jan 2, 2024
76b9de5
Bump mockito
jamesagnew Jan 3, 2024
b50d736
Fix memory leak
jamesagnew Jan 3, 2024
fc9c32b
Test cleanup
jamesagnew Jan 3, 2024
8f82c60
Test fix
jamesagnew Jan 3, 2024
c57faa2
Test fixes
jamesagnew Jan 4, 2024
6eb812f
Test fix
jamesagnew Jan 4, 2024
ab19b08
Test fix
jamesagnew Jan 4, 2024
20daf25
Test fix
jamesagnew Jan 4, 2024
ac8f83c
Test fix
jamesagnew Jan 4, 2024
9cbb6e7
Prepare to try and rework max clauses
jamesagnew Jan 5, 2024
00278d1
Refactor large VS expansion
jamesagnew Jan 5, 2024
80e9c57
Spotless
jamesagnew Jan 5, 2024
47c9bf8
Test fix
jamesagnew Jan 5, 2024
0f22b5a
Merge branch 'ja_20240102_dep_bumps' of github.com:hapifhir/hapi-fhir…
jamesagnew Jan 5, 2024
cb81e27
Version bump
jamesagnew Jan 5, 2024
dad66f7
Merge branch 'master' into ja_20240102_dep_bumps
jamesagnew Jan 5, 2024
d79b6fa
Test fixes
jamesagnew Jan 5, 2024
5777652
Bump maven container
jamesagnew Jan 7, 2024
b80f122
Build fix
jamesagnew Jan 7, 2024
fda79e3
Add license headers
jamesagnew Jan 8, 2024
d7b900f
Merge branch 'master' into ja_20240102_dep_bumps
jamesagnew Jan 9, 2024
296e49a
Merge branch 'ja_20240102_dep_bumps' of github.com:jamesagnew/hapi-fh…
jamesagnew Jan 9, 2024
28e7ad6
Merge branch 'master' into ja_20240102_dep_bumps
jamesagnew Jan 12, 2024
f328f91
Version bump
jamesagnew Jan 12, 2024
7046e0c
License headers
jamesagnew Jan 12, 2024
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Bump maven container
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jamesagnew committed Jan 7, 2024
commit 5777652f6b86085c2de9572244e1134ebaf0c4d8
10 changes: 0 additions & 10 deletions hapi-fhir-jpaserver-base/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -338,16 +338,6 @@
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-envers</artifactId>
</dependency>
<!-- FIXME: remove?
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-phonetic</artifactId>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-backward-codecs</artifactId>
</dependency>
-->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analysis-phonetic</artifactId>
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -1344,8 +1344,7 @@ private ValueSet.ConceptReferenceComponent getMatchedConceptIncludedInValueSet(
/**
* Helper method which builds a predicate for the expansion
*/
private PredicateFinalStep buildExpansionPredicate(
List<String> theCodes, SearchPredicateFactory thePredicate) {
private PredicateFinalStep buildExpansionPredicate(List<String> theCodes, SearchPredicateFactory thePredicate) {
assert !theCodes.isEmpty();
return thePredicate.simpleQueryString().field("myCode").matching(String.join(" | ", theCodes));
}
Expand Down
12 changes: 0 additions & 12 deletions pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -1548,18 +1548,6 @@
<artifactId>jena-arq</artifactId>
<version>${jena_version}</version>
</dependency>
<!-- FIXME: remove?
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-phonetic</artifactId>
<version>${lucene_version}</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-backward-codecs</artifactId>
<version>${lucene_version}</version>
</dependency>
-->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analysis-phonetic</artifactId>
Expand Down
6 changes: 3 additions & 3 deletions release-pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -140,7 +140,7 @@ jobs:
# want to fail fast if there is an issue, and avoid running the tests more than once, so it doesn't take all day.
timeoutInMinutes: 360
dependsOn: ['get_release_version', 'get_branch_id']
container: maven:3-amazoncorretto-21
container: maven:3.9-eclipse-temurin-21-jammy
steps:
- task: Cache@2
inputs:
Expand All @@ -153,7 +153,7 @@ jobs:
releaseType: stable
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /usr/java/openjdk
displayName: Checkstyle Build
inputs:
mavenPomFile: 'hapi-fhir-checkstyle/pom.xml'
Expand All @@ -166,7 +166,7 @@ jobs:
script: mkdir -p $(MAVEN_CACHE_FOLDER); pwd; ls -al $(MAVEN_CACHE_FOLDER)
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /opt/java/openjdk
inputs:
goals: 'clean install'
# These are Maven CLI options (and show up in the build logs) - "-nsu"=Don't update snapshots. We can remove this when Maven OSS is more healthy
Expand Down
4 changes: 2 additions & 2 deletions snapshot-pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ variables:
- group: GPG_VARIABLE_GROUP
- group: SONATYPE_VARIABLE_GROUP

container: maven:3-amazoncorretto-21
container: maven:3.9-eclipse-temurin-21-jammy
steps:

# We need a valid signing key to sign our builds for deployment to sonatype. We have uploaded
Expand Down Expand Up @@ -92,7 +92,7 @@ steps:
# 5. Deploy SNAPSHOT build to sonatype
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /opt/java/openjdk
displayName: 'Deploy to Sonatype staging'
inputs:
mavenPomFile: '$(System.DefaultWorkingDirectory)/pom.xml'
Expand Down
12 changes: 6 additions & 6 deletions test-job-template.yml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ jobs:
- job: setup
displayName: setup-and-cache-build
timeoutInMinutes: 60
container: maven:3-amazoncorretto-21
container: maven:3.9-eclipse-temurin-21-jammy
pool:
vmImage: ubuntu-latest
steps:
Expand All @@ -23,7 +23,7 @@ jobs:
script: mkdir -p $(MAVEN_CACHE_FOLDER); pwd; ls -al $(MAVEN_CACHE_FOLDER)
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /opt/java/openjdk
inputs:
goals: 'install'
# These are Maven CLI options (and show up in the build logs) - "-nsu"=Don't update snapshots. We can remove this when Maven OSS is more healthy
Expand All @@ -36,7 +36,7 @@ jobs:
timeoutInMinutes: 60
displayName: ${{ p.name }}
dependsOn: [ 'setup' ]
container: maven:3-amazoncorretto-21
container: maven:3.9-eclipse-temurin-21-jammy
pool:
vmImage: ubuntu-latest
steps:
Expand All @@ -55,7 +55,7 @@ jobs:
path: $(MAVEN_CACHE_FOLDER)
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /opt/java/openjdk
inputs:
mavenPomFile: '$(System.DefaultWorkingDirectory)/pom.xml'
goals: 'clean verify jacoco:report -pl ${{ p.module }}'
Expand Down Expand Up @@ -90,7 +90,7 @@ jobs:
vmImage: ubuntu-latest
timeoutInMinutes: 60
displayName: generate_test_reports
container: maven:3-amazoncorretto-21
container: maven:3.9-eclipse-temurin-21-jammy
dependsOn:
- ${{ each p in parameters.modules }}:
- ${{ p.name }}
Expand Down Expand Up @@ -119,7 +119,7 @@ jobs:
targetFolder: '$(System.DefaultWorkingDirectory)/${{ p.module }}/target/'
- task: Maven@3
env:
JAVA_HOME_11_X64: /usr/java/openjdk-17
JAVA_HOME_11_X64: /usr/java/openjdk
inputs:
mavenPomFile: '$(System.DefaultWorkingDirectory)/pom.xml'
goals: 'jacoco:report-aggregate'
Expand Down
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