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Rel 6 10 mb #5441

Merged
merged 25 commits into from
Nov 10, 2023
Merged

Rel 6 10 mb #5441

merged 25 commits into from
Nov 10, 2023

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tadgh
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@tadgh tadgh commented Nov 8, 2023

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michaelabuckley and others added 25 commits October 21, 2023 00:10
Allow the search cache when using consent if safe
…ng SearchParameter base with remaining resources (#5376)

* Change package installation behavior such that it updates the existing SearchParameter base with remaining resources

* Change package installation behavior such that it updates the existing SearchParameter base with remaining resources

* Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable.

* Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable.
…or is registered and Enabled Partitioning (#5389)

* Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - Implementation
…r _lastUpdated. (#5177)

* version bump

* Bump to core release 6.0.22 (#5028)

* Bump to core release 6.0.16

* Bump to core version 6.0.20

* Fix errors thrown as a result of VersionSpecificWorkerContextWrapper

* Bump to core 6.0.22

* Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127)

* dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID

* added changelog

* changed to valid version number

* changed to valid version number, need to be ordered by version number...

* 5123 - Use DEFAULT partition for server-based requests if none specified (#5124)

5123 - Use DEFAULT partition for server-based requests if none specified

* consent remove all suppresses next link in bundle (#5119)

* added FIXME with source of issue

* added FIXME with root cause

* added FIXME with root cause

* Providing solution to the issue and removing fixmes.

* Providing changelog

* auto-formatting.

* Adding new test.

* Adding a new test for standard paging

* let's try this and see if it works...?

* fix tests

* cleanup to trigger a new run

* fixing tests

---------

Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: peartree <[email protected]>

* 5117 MDM Score for No Match Fields Should Not Be Included in Total Score  (#5118)

* fix, test, changelog

* fix, test, changelog

---------

Co-authored-by: justindar <[email protected]>

* _source search parameter needs to support modifiers (#5095)

_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers

* Fix HFQL docs (#5151)

* Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156)

* Initial failing test.

* Solution with changelog.

* fixing format.

* Addressing comment from code review.

* fixing failing test.

---------

Co-authored-by: peartree <[email protected]>

* documentation update (#5154)

Co-authored-by: leif stawnyczy <[email protected]>

* Fix hsql jdbc driver deps (#5168)

Avoid non-included classes in jdbc driver dependencies.

* $delete-expunge over 10k resources will now delete all resources (#5144)

* First commit with very rough fix and unit test.

* Refinements to ResourceIdListStep and Batch2DaoSvcImpl.  Make LoadIdsStepTest pass.   Enhance Batch2DaoSvcImplTest.

* Spotless

* Fix checkstyle errors.

* Fix test failures.

* Minor refactoring.  New unit test.  Finalize changelist.

* Spotless fix.

* Delete now useless code from unit test.

* Delete more useless code.

* Test pre-commit hook

* More spotless fixes.

* Address most code review feedback.

* Remove use of pageSize parameter and see if this breaks the pipeline.

* Remove use of pageSize parameter and see if this breaks the pipeline.

* Fix the noUrl case by passing an unlimited Pegeable instead.  Effectively stop using page size for most databases.

* Deprecate the old method and have it call the new one by default.

* updating documentation (#5170)

Co-authored-by: leif stawnyczy <[email protected]>

* _source search parameter modifiers for Subscription matching (#5159)

* _source search parameter modifiers for Subscription matching - test, implementation and changelog

* first fix

* tests and preliminary fixes

* wip, commit before switching to release branch.

* adding capability to handle _lastUpdated in reverse search (_has)

* adding changelog

* applying spotless.

* addressing code review comments.

---------

Co-authored-by: tadgh <[email protected]>
Co-authored-by: dotasek <[email protected]>
Co-authored-by: Steve Corbett <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: peartree <[email protected]>
Co-authored-by: jdar8 <[email protected]>
Co-authored-by: justindar <[email protected]>
Co-authored-by: volodymyr-korzh <[email protected]>
Co-authored-by: Nathan Doef <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: TipzCM <[email protected]>
Co-authored-by: leif stawnyczy <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: Luke deGruchy <[email protected]>
* Add settings used in CR CDS Services.  Remove config dependency on Spring Boot.

* Add changelog

* Use String.format rather than concat strings

* spotless apply

* Add javadoc
Add upgrade notes for forced-id
Use bulk DMA statements when cleaning the search cache.
The cleaner job now works as long as possible until a deadline based on the scheduling frequency.
…titioning Enabled - fix cross-tenant requests failure (#5408)

* Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - fix and tests added
#5421)

* Enable child classes to use Boolean class return type

* spotless

---------

Co-authored-by: juan.marchionatto <[email protected]>
…nly for the first resource entry of the bundle (#5420)

* If AutoInflateBinaries is enabled, binaries created on disk by bundled requests are created only for the first resource entry - fix
…orService (#5421)" (#5423)

This reverts commit 4e295a5.

Co-authored-by: Nathan Doef <[email protected]>
* Sort `_id` using new FHIR_ID column.
* Fix old tests that put client-assigned ids first.

* Better indexing for sort
* Bump core to 6.1.2.1

Patch release that uses https for primary org.hl7.fhir.core package server

* Bump core to 6.1.2.2
)

Implement change in a non-disruptive way for overriders

Co-authored-by: juan.marchionatto <[email protected]>
Change name to _pid to match our standard and add warning.
…Statement, Parameters and StructuredDefinition (#5432)

* Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition.

* Fix spotless issue
* Bump jetty

* Bump okio-jvm

* 8.2.0 mysql connector

* Jena and elastic bumps

* Fix test
* Initial fix and unit test provided

* spottless check

* Made relevant changes to make solution version agnostic

* relevant logic changes made

* spotless changes made

* New logic added to fix failing test cases

* formatting

* New logic to make the function more robust

* spotless checks

* Left a trailing slash in the tests

* Made relevant test changes and changed logic

* spotless changes

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_10_0/5412-during-partition-fullUrl-not-shown-in-response.yaml

changing changelog

Co-authored-by: volodymyr-korzh <[email protected]>

* Formatting requirements

---------

Co-authored-by: volodymyr-korzh <[email protected]>
…is too large (#5414)

* first fix

* - added the ability to handle null payload to SubscriptionDeliveringMessageSubscriber and SubscriptionDeliveringEmailSubscriber
- refactored code to reduce repeated code
- cleaned unnecessary comments and reformatted files

* Changed myResourceModifiedMessagePersistenceSvc to be autowired

* removed unused import

* added error handling when inflating the message to email and message subscriber

* reformatted code

* Fixing subscription tests with mocked IResourceModifiedMessagePersistenceSvc

* Changes by gary

* Reformatted file

* fixed failed tests

* implemented test for message and email delivery subscriber. Fixed logical error. Reformatted File.

* - implemented IT
- fixed logical error
- added changelog

* fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor

* fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor

* resolve code review comments

* reformatted files

* fixed tests
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github-actions bot commented Nov 8, 2023

Formatting check succeeded!

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codecov bot commented Nov 8, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (2f5ffe7) 81.32% compared to head (069a2c0) 82.95%.
Report is 339 commits behind head on master.

❗ Current head 069a2c0 differs from pull request most recent head a1a16e4. Consider uploading reports for the commit a1a16e4 to get more accurate results

Additional details and impacted files
@@             Coverage Diff              @@
##             master    #5441      +/-   ##
============================================
+ Coverage     81.32%   82.95%   +1.63%     
- Complexity    23650    26539    +2889     
============================================
  Files          1425     1637     +212     
  Lines         86399   103054   +16655     
  Branches      11677    13152    +1475     
============================================
+ Hits          70265    85491   +15226     
- Misses        10947    11949    +1002     
- Partials       5187     5614     +427     

see 1659 files with indirect coverage changes

☔ View full report in Codecov by Sentry.
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@tadgh tadgh merged commit 777859a into master Nov 10, 2023
62 of 64 checks passed
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9 participants