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6.4.0 Mergeback #4563

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merged 57 commits into from
Feb 17, 2023
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078dcd9
One more fix for #4467
jamesagnew Jan 26, 2023
1a9b749
Enabling massIngestionMode causes incomplete resource deletion (#4476)
epeartree Jan 30, 2023
40508a0
Provide the capability to request that the name of the subscription m…
epeartree Jan 30, 2023
882f22f
Change visibility of migration method (#4471)
nathandoef Jan 31, 2023
67ace43
Fix subscription validation not to validate partition ID when invoked…
lukedegruchy Jan 31, 2023
dd8c8a3
Reindex batch job fails when processing deleted resources. (#4482)
epeartree Feb 1, 2023
efae3b5
cleaning up checkstyle files (#4470)
markiantorno Feb 1, 2023
b1770ab
Bump core to 5.6.881 (#4496)
dotasek Feb 2, 2023
0a213a5
Issue 4486 mdm inconsistent possible match score values (#4487)
jmarchionatto Feb 2, 2023
740fec9
Revert "cleaning up checkstyle files (#4470)"
markiantorno Feb 2, 2023
c642853
core version fix
markiantorno Feb 2, 2023
a855af5
Loosen rules for id helper
tadgh Feb 2, 2023
df83d05
Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4
tadgh Feb 2, 2023
7d554d5
License
tadgh Feb 3, 2023
0996124
fix batch2 reduction step (#4499)
TipzCM Feb 3, 2023
2a963ac
Scheduled batch 2 bulk export job and binary delete (#4492)
lukedegruchy Feb 6, 2023
33f6ed3
Change bulk import test for valueUri type (#4503)
samguntersmilecdr Feb 6, 2023
e160325
CVE resolutions (#4513)
tadgh Feb 6, 2023
d08995a
Add check in scanner (#4518)
tadgh Feb 7, 2023
ca21abf
4516 create hapi fhir cli command to clear stale lock entries (#4517)
tadgh Feb 7, 2023
85ecbf1
Unable to Expunge CodeSystem (#4507)
isaacwen Feb 7, 2023
e724040
New line::
tadgh Feb 8, 2023
697bd27
Update to documentation regarding narrative generation; (#4521)
epeartree Feb 8, 2023
f321573
changed what score is set for mdmlinks that created new golden resour…
longma1 Feb 8, 2023
71ea1b4
REVERT: change to operationoutcome.html
tadgh Feb 8, 2023
6b3b954
trying to fix BulkDataExportTest testGroupBulkExportNotInGroup_DoesNo…
TipzCM Feb 8, 2023
b4778f4
fix build (#4530)
nathandoef Feb 9, 2023
3d9a318
Making narrative_generation.md reference an html snippet (#4531)
epeartree Feb 9, 2023
53252b8
fixed the issue of meta.source field inconsistently populated in subs…
Qingyixia Feb 9, 2023
fe078c2
4441 rel 6 4 bad references creation bug (#4519)
TipzCM Feb 9, 2023
f3847b1
fixed channel import null pointer exception from null header (#4534)
samguntersmilecdr Feb 9, 2023
e99aebd
Revert "fixed the issue of meta.source field inconsistently populated…
tadgh Feb 9, 2023
03ccf3e
Better error handling for when channel type is not supported (#4538)
KGJ-software Feb 10, 2023
fb0512f
Avoid logging message payloads that contain sensitive data (#4537)
michaelabuckley Feb 10, 2023
9754a72
Bulk Export Bug With Many Resources and Low Max File Size (#4506)
nathandoef Feb 10, 2023
9578610
bump ver
tadgh Feb 11, 2023
a0e4c29
License updates'
tadgh Feb 11, 2023
0a58bc8
merge rel_6_4
Feb 12, 2023
18f1e3b
Remove checkstyle
tadgh Feb 12, 2023
85db150
Verison bump
tadgh Feb 13, 2023
223d54a
Move migrations
tadgh Feb 13, 2023
814a145
semicolon
tadgh Feb 13, 2023
acfde15
Downgrade dep'
tadgh Feb 14, 2023
b2644c1
Updating version to: 6.4.1 post release.
markiantorno Feb 16, 2023
f08823b
Add javadocs and sources to our serviceloaders
tadgh Feb 17, 2023
384bea1
Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4
tadgh Feb 17, 2023
96855fb
Reset version
tadgh Feb 17, 2023
529e478
Change parent
tadgh Feb 17, 2023
23b7acf
Remove bumped version
tadgh Feb 17, 2023
71fa4f2
License fixes, new parent
tadgh Feb 17, 2023
827bbba
Updating version to: 6.4.1 post release.
markiantorno Feb 17, 2023
92dceb8
Merge branch 'master' into 4546-6_4_mergeback
tadgh Feb 17, 2023
6b6f1e2
Fix bad creation of versionenum
tadgh Feb 17, 2023
1b589d2
Merge branch 'rel_6_4' into 4546-6_4_mergeback
tadgh Feb 17, 2023
16ce392
re-add checkstyle
tadgh Feb 17, 2023
2639284
respect move-up into storage settings from jpastoragesettings
tadgh Feb 17, 2023
e09b983
remove duplicate test
tadgh Feb 17, 2023
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2 changes: 1 addition & 1 deletion hapi-deployable-pom/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-android/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-base/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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Original file line number Diff line number Diff line change
Expand Up @@ -121,3 +121,4 @@ public static VersionEnum latestVersion() {
return values[values.length - 1];
}
}
V6_4_1,
4 changes: 2 additions & 2 deletions hapi-fhir-bom/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,14 +4,14 @@
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-bom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<packaging>pom</packaging>
<name>HAPI FHIR BOM</name>

<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-checkstyle/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-cli/hapi-fhir-cli-app/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-cli/hapi-fhir-cli-jpaserver/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../../hapi-deployable-pom</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-cli/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-client-okhttp/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-client/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-converter/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-dist/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-docs/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jacoco/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jaxrsserver-base/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpa/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-base/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-elastic-test-utilities/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-ips/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-mdm/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-model/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-searchparam/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-subscription/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-dstu2/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-dstu3/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-r4/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-r4b/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-r5/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-test-utilities/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-uhnfhirtest/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-server-mdm/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-server-openapi/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-server/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-serviceloaders/hapi-fhir-caching-api/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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4 changes: 2 additions & 2 deletions hapi-fhir-serviceloaders/hapi-fhir-caching-caffeine/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

Expand All @@ -20,7 +20,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-api</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
</dependency>
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId>
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2 changes: 1 addition & 1 deletion hapi-fhir-serviceloaders/hapi-fhir-caching-guava/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-serviceloaders/hapi-fhir-caching-testing/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../../pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-serviceloaders/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>hapi-fhir</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../pom.xml</relativePath>
</parent>

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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
</parent>

<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>6.4.0</version>
<version>6.4.1</version>
</parent>

<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>
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