Add alternative application.yaml for CDS settings.

src/main/resources/cds.application.yaml

@@ -0,0 +1,294 @@
+#Uncomment the "servlet" and "context-path" lines below to make the fhir endpoint available at /example/path/fhir instead of the default value of /fhir
+server:
+# servlet:
+# context-path: /example/path
+ port: 8080
+#Adds the option to go to eg. http:https://localhost:8080/actuator/health for seeing the running configuration
+#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
+management:
+ endpoints:
+ web:
+ exposure:
+ include: "health,prometheus"
+spring:
+ main:
+ allow-circular-references: true
+ allow-bean-definition-overriding: true
+ flyway:
+ enabled: false
+ baselineOnMigrate: true
+ fail-on-missing-locations: false
+ datasource:
+ #url: 'jdbc:h2:file:./target/database/h2'
+ url: jdbc:h2:mem:test_mem
+ username: sa
+ password: null
+ driverClassName: org.h2.Driver
+ max-active: 15
+
+ # database connection pool size
+ hikari:
+ maximum-pool-size: 10
+ jpa:
+ properties:
+ hibernate.format_sql: false
+ hibernate.show_sql: false
+
+ #Hibernate dialect is automatically detected except Postgres and H2.
+ #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
+ #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect
+ hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
+ # hibernate.hbm2ddl.auto: update
+ # hibernate.jdbc.batch_size: 20
+ # hibernate.cache.use_query_cache: false
+ # hibernate.cache.use_second_level_cache: false
+ # hibernate.cache.use_structured_entries: false
+ # hibernate.cache.use_minimal_puts: false
+
+ ### These settings will enable fulltext search with lucene or elastic
+ hibernate.search.enabled: true
+ ### lucene parameters
+# hibernate.search.backend.type: lucene
+# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
+# hibernate.search.backend.directory.type: local-filesystem
+# hibernate.search.backend.directory.root: target/lucenefiles
+# hibernate.search.backend.lucene_version: lucene_current
+ ### elastic parameters ===> see also elasticsearch section below <===
+# hibernate.search.backend.type: elasticsearch
+# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
+hapi:
+ fhir:
+ ### This flag when enabled to true, will avail evaluate measure operations from CR Module.
+ ### Flag is false by default, can be passed as command line argument to override.
+ cr:
+ enabled: true
+ caregaps:
+ reporter: "default"
+ section_author: "default"
+ cql:
+ use_embedded_libraries: true
+ compiler:
+ ### These are low-level compiler options.
+ ### They are not typically needed by most users.
+ # validate_units: true
+ # verify_only: false
+ # compatibility_level: "1.5"
+ error_level: Info
+ signature_level: All
+ # analyze_data_requirements: false
+ # collapse_data_requirements: false
+ # translator_format: JSON
+ # enable_date_range_optimization: true
+ enable_annotations: true
+ enable_locators: true
+ enable_results_type: true
+ enable_detailed_errors: true
+ # disable_list_traversal: false
+ # disable_list_demotion: false
+ # enable_interval_demotion: false
+ # enable_interval_promotion: false
+ # disable_method_invocation: false
+ # require_from_keyword: false
+ # disable_default_model_info_load: false
+ runtime:
+ debug_logging_enabled: false
+ # enable_validation: false
+ # enable_expression_caching: true
+ terminology:
+ valueset_preexpansion_mode: REQUIRE # USE_IF_PRESENT, REQUIRE, IGNORE
+ valueset_expansion_mode: PERFORM_NAIVE_EXPANSION # AUTO, USE_EXPANSION_OPERATION, PERFORM_NAIVE_EXPANSION
+ valueset_membership_mode: USE_EXPANSION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_EXPANSION
+ code_lookup_mode: USE_CODESYSTEM_URL # AUTO, USE_VALIDATE_CODE_OPERATION, USE_CODESYSTEM_URL
+ data:
+ search_parameter_mode: USE_SEARCH_PARAMETERS # AUTO, USE_SEARCH_PARAMETERS, FILTER_IN_MEMORY
+ terminology_parameter_mode: FILTER_IN_MEMORY # AUTO, USE_VALUE_SET_URL, USE_INLINE_CODES, FILTER_IN_MEMORY
+ profile_mode: OFF # ENFORCED, DECLARED, OPTIONAL, TRUST, OFF
+
+ cdshooks:
+ enabled: true
+ clientIdHeaderName: client_id
+
+ ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
+ openapi_enabled: true
+ ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
+ fhir_version: R4
+ ### Flag is false by default. This flag enables runtime installation of IG's.
+ ig_runtime_upload_enabled: false
+ ### This flag when enabled to true, will avail evaluate measure operations from CR Module.
+
+ ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
+ ### to determine the FHIR server address
+ # use_apache_address_strategy: false
+ ### forces the use of the https:// protocol for the returned server address.
+ ### alternatively, it may be set using the X-Forwarded-Proto header.
+ # use_apache_address_strategy_https: false
+ ### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
+ ### Folder with custom content MUST be named custom. If omitted then default content applies
+ #custom_content_path: ./custom
+ ### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
+ ### will be served under /web/app
+ #app_content_path: ./configs/app
+ ### enable to set the Server URL
+ # server_address: http:https://hapi.fhir.org/baseR4
+ # defer_indexing_for_codesystems_of_size: 101
+ # install_transitive_ig_dependencies: true
+ #implementationguides:
+ ### example from registry (packages.fhir.org)
+ # swiss:
+ # name: swiss.mednet.fhir
+ # version: 0.8.0
+ # reloadExisting: false
+ # installMode: STORE_AND_INSTALL
+ # example not from registry
+ # ips_1_0_0:
+ # packageUrl: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
+ # name: hl7.fhir.uv.ips
+ # version: 1.0.0
+ # supported_resource_types:
+ # - Patient
+ # - Observation
+ ##################################################
+ # Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
+ ##################################################
+ # allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
+ # allow_cascading_deletes: true
+ # allow_contains_searches: true
+ # allow_external_references: true
+ # allow_multiple_delete: true
+ # allow_override_default_search_params: true
+ # auto_create_placeholder_reference_targets: false
+ ### tells the server to automatically append the current version of the target resource to references at these paths
+ # auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject
+ # ips_enabled: false
+ # default_encoding: JSON
+ # default_pretty_print: true
+ # default_page_size: 20
+ # delete_expunge_enabled: true
+ # enable_repository_validating_interceptor: true
+ # enable_index_missing_fields: false
+ # enable_index_of_type: true
+ # enable_index_contained_resource: false
+ # resource_dbhistory_enabled: false
+ ### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
+ ### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
+ advanced_lucene_indexing: false
+ bulk_export_enabled: false
+ bulk_import_enabled: false
+ # language_search_parameter_enabled: true
+ # enforce_referential_integrity_on_delete: false
+ # This is an experimental feature, and does not fully support _total and other FHIR features.
+ # enforce_referential_integrity_on_delete: false
+ # enforce_referential_integrity_on_write: false
+ # etag_support_enabled: true
+ # expunge_enabled: true
+ # client_id_strategy: ALPHANUMERIC
+ # server_id_strategy: SEQUENTIAL_NUMERIC
+ # fhirpath_interceptor_enabled: false
+ # filter_search_enabled: true
+ # graphql_enabled: true
+ narrative_enabled: false
+ mdm_enabled: false
+ mdm_rules_json_location: "mdm-rules.json"
+ # local_base_urls:
+ # - https://hapi.fhir.org/baseR4
+ logical_urls:
+ - http:https://terminology.hl7.org/*
+ - https://terminology.hl7.org/*
+ - http:https://snomed.info/*
+ - https://snomed.info/*
+ - http:https://unitsofmeasure.org/*
+ - https://unitsofmeasure.org/*
+ - http:https://loinc.org/*
+ - https://loinc.org/*
+ # partitioning:
+ # allow_references_across_partitions: false
+ # partitioning_include_in_search_hashes: false
+ cors:
+ allow_Credentials: true
+ # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
+ allowed_origin:
+ - '*'
+
+ # Search coordinator thread pool sizes
+ search-coord-core-pool-size: 20
+ search-coord-max-pool-size: 100
+ search-coord-queue-capacity: 200
+
+ # comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans
+ #custom-bean-packages:
+
+ # comma-separated list of fully qualified interceptor classes. 
+ # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', 
+ # or will be instantiated via reflection using an no-arg contructor; then registered with the server 
+ #custom-interceptor-classes: 
+
+ # comma-separated list of fully qualified provider classes. 
+ # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', 
+ # or will be instantiated via reflection using an no-arg contructor; then registered with the server 
+ #custom-provider-classes: 
+
+ # Threadpool size for BATCH'ed GETs in a bundle.
+ # bundle_batch_pool_size: 10
+ # bundle_batch_pool_max_size: 50
+
+ # logger:
+ # error_format: 'ERROR - ${requestVerb} ${requestUrl}'
+ # format: >-
+ # Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
+ # Operation[${operationType} ${operationName} ${idOrResourceName}]
+ # UA[${requestHeader.user-agent}] Params[${requestParameters}]
+ # ResponseEncoding[${responseEncodingNoDefault}]
+ # log_exceptions: true
+ # name: fhirtest.access
+ # max_binary_size: 104857600
+ # max_page_size: 200
+ # retain_cached_searches_mins: 60
+ # reuse_cached_search_results_millis: 60000
+ tester:
+ home:
+ name: Local Tester
+ server_address: 'http:https://localhost:8080/fhir'
+ refuse_to_fetch_third_party_urls: false
+ fhir_version: R4
+ global:
+ name: Global Tester
+ server_address: "http:https://hapi.fhir.org/baseR4"
+ refuse_to_fetch_third_party_urls: false
+ fhir_version: R4
+ # validation:
+ # requests_enabled: true
+ # responses_enabled: true
+ # binary_storage_enabled: true
+ inline_resource_storage_below_size: 4000
+# bulk_export_enabled: true
+# subscription:
+# resthook_enabled: true
+# websocket_enabled: false
+# email:
+# from: [email protected]
+# host: google.com
+# port:
+# username:
+# password:
+# auth:
+# startTlsEnable:
+# startTlsRequired:
+# quitWait:
+# lastn_enabled: true
+# store_resource_in_lucene_index_enabled: true
+### This is configuration for normalized quantity search level default is 0
+### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
+### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
+### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
+# normalized_quantity_search_level: 2
+#elasticsearch:
+# debug:
+# pretty_print_json_log: false
+# refresh_after_write: false
+# enabled: false
+# password: SomePassword
+# required_index_status: YELLOW
+# rest_url: 'localhost:9200'
+# protocol: 'http'
+# schema_management_strategy: CREATE
+# username: SomeUsername