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CiliaQ Public
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
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CiliaQ_Editor Public
An ImageJ plugin to edit segmented channels in images output by CiliaQ_Preparator.
Java GNU General Public License v3.0 UpdatedAug 2, 2024 -
MotiQ Public
A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.
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SpermQ Public
An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
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CiliaQ_Preparator Public
An ImageJ plugin to prepare images for analysis using CiliaQ.
Java GNU General Public License v3.0 UpdatedSep 21, 2023 -
FreQ Public
An ImageJ plugin to analyze pixel intensity oscillations in time-lapse 2D images. For example, this allows to characterize the ciliary beat of multi-ciliated cells in time-lapse images acquired wit…
Java GNU General Public License v3.0 UpdatedSep 14, 2023 -
NuclQ Public
NuclQ - an ImageJ plugin to quantify intensity levels by distance to the nuclear membrane.
image-analysis imagej-plugins fiji-plugin fluorescence-microscopy-imaging cell-biology cell-nuclei fluorescence-intensityJava GNU General Public License v3.0 UpdatedSep 14, 2023 -
AdipoQ Public
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
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AdipoQ_Preparator Public
ImageJ plugin to quantify HE-staining images of adipose tissue.
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imagej.github.io Public
Forked from imagej/imagej.github.ioThe ImageJ wiki
JavaScript Other UpdatedDec 4, 2022 -
list-of-update-sites Public
Forked from imagej/list-of-update-sitesThe update sites ImageJ2 knows about automatically
Python UpdatedNov 27, 2022 -
ColorStackByTimeAndProject Public
ImageJ macros to color stacks by time point and create a video where the projection builds up frame by frame.
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AdipoQ_Analyzer Public
ImageJ plugin to quantify HE-staining images of adipose tissue - Part II.
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ExtractSharpestPlane_JNH Public
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
Java GNU General Public License v3.0 UpdatedNov 4, 2021 -
MultiFocal_Preparation Public
An ImageJ plugin to convert raw camera recordings from a four-plane multifocal imaging setup, where the planes are projected to different positions of the camera chip, into a hyperstack (including …
Java GNU General Public License v3.0 UpdatedAug 9, 2021 -
A toolbox to analyze spherical and filamentous objects in multifocal images with high precision.
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SpermQ-MF_GenerateLUT Public
By merging width recordings from piezo-driven multifocal z-stacks through immotile sperm, generate a Look-Up-Table for the relationship between the flagellar width and the flagellar z-position for …
Java GNU General Public License v3.0 UpdatedMay 13, 2021 -
MultiFocal_AlignCurvesByLMS Public
A pure java tool to align bead profiles obtained by MultiFocalParticleTracker-Calibrator-3 across different planes by LMS.
Java GNU General Public License v3.0 UpdatedMay 13, 2021 -
An ImageJ plugin to obtain the width of beads in multifocal images for generating a calibration table.
Java GNU General Public License v3.0 UpdatedMay 13, 2021 -
A plugin to calculate the z position of beads in multifocal images based on provding a calibrated relationship of bead radius and z position.
Java GNU General Public License v3.0 UpdatedMay 13, 2021 -
SpermQ-MF Public
Analyzing sperm in images from multifocal microscopy.
Java GNU General Public License v3.0 UpdatedSep 2, 2020 -
SpermQ_Preparator Public
An ImageJ plugin to preprocess images for SpermQ analysis.
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canny3d-thresholder Public
Forked from sRassmann/canny3d-thresholderImageJ plugin to preform image binarization based on a canny edge detection in 3 dimensions
Java GNU General Public License v3.0 UpdatedApr 30, 2020 -
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