Remove ARPACK and derived functions from julia repo (JuliaLang#27616)

* Remove ARPACK and derived functions from julia repo

* Update docs/Manifest.toml

* fix Pkg tests to not rely on Compat

* Update to latest release of Compat

.travis.yml

@@ -84,19 +84,18 @@ before_install:
  contrib/travis_fastfail.sh || exit 1;
  brew tap staticfloat/julia > /dev/null;
  brew rm --force $(brew deps --HEAD julia);
- brew install -v gcc gmp mpfr pcre2 staticfloat/julia/openblas-julia staticfloat/julia/arpack-julia staticfloat/julia/suite-sparse-julia staticfloat/juliadeps/libgfortran;
+ brew install -v gcc gmp mpfr pcre2 staticfloat/julia/openblas-julia staticfloat/julia/suite-sparse-julia staticfloat/juliadeps/libgfortran;
  BUILDOPTS="-j3 USECLANG=1 USECCACHE=1 BINARYBUILDER_TRIPLET=x86_64-apple-darwin14";
  BUILDOPTS="$BUILDOPTS USE_BINARYBUILDER_LLVM=1 LLVM_CONFIG=$TRAVIS_BUILD_DIR/usr/tools/llvm-config LLVM_SIZE=$TRAVIS_BUILD_DIR/usr/tools/llvm-size";
  BUILDOPTS="$BUILDOPTS VERBOSE=1 USE_BLAS64=0 SUITESPARSE_INC=-I$(brew --prefix suite-sparse-julia)/include FORCE_ASSERTIONS=1";
  BUILDOPTS="$BUILDOPTS LIBBLAS=-lopenblas LIBBLASNAME=libopenblas LIBLAPACK=-lopenblas LIBLAPACKNAME=libopenblas";
- for lib in SUITESPARSE ARPACK BLAS LAPACK GMP MPFR PCRE LIBUNWIND; do
+ for lib in SUITESPARSE BLAS LAPACK GMP MPFR PCRE LIBUNWIND; do
  BUILDOPTS="$BUILDOPTS USE_SYSTEM_$lib=1";
  done;
  export LDFLAGS="-L$(brew --prefix openblas-julia)/lib -L$(brew --prefix suite-sparse-julia)/lib";
  spawn_DYLD_FALLBACK_LIBRARY_PATH="/usr/local/lib:/lib:/usr/lib";
  spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix openblas-julia)/lib";
  spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix suite-sparse-julia)/lib";
- spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix arpack-julia)/lib";
  export JULIA_MACOS_SPAWN="DYLD_FALLBACK_LIBRARY_PATH=\"$spawn_DYLD_FALLBACK_LIBRARY_PATH\" \$1";
  export BUILDOPTS="$BUILDOPTS spawn=\$(JULIA_MACOS_SPAWN)";
  make $BUILDOPTS -C contrib -f repackage_system_suitesparse4.make;

Make.inc

@@ -38,7 +38,6 @@ USE_SYSTEM_BLAS:=0
 USE_SYSTEM_LAPACK:=0
 USE_SYSTEM_GMP:=0
 USE_SYSTEM_MPFR:=0
-USE_SYSTEM_ARPACK:=0
 USE_SYSTEM_SUITESPARSE:=0
 USE_SYSTEM_LIBUV:=0
 USE_SYSTEM_UTF8PROC:=0
@@ -1075,16 +1074,9 @@ MKLLIB := $(MKLROOT)/lib/ia32
 endif
 USE_SYSTEM_BLAS:=1
 USE_SYSTEM_LAPACK:=1
-ifeq ($(OS), WINNT)
-LIBBLASNAME := mkl_rt
-LIBLAPACKNAME := mkl_rt
-# work around libtool issue with arpack
-MKL_LDFLAGS := -L$(MKLLIB) -Wl,-lmkl_rt
-else
 LIBBLASNAME := libmkl_rt
 LIBLAPACKNAME := libmkl_rt
 MKL_LDFLAGS := -L$(MKLLIB) -lmkl_rt
-endif
 ifneq ($(strip $(MKLLIB)),)
  ifeq ($(OS), Linux)
  RPATH_MKL := -Wl,-rpath,$(MKLLIB)

Makefile

@@ -225,7 +225,6 @@ JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBSSH2) += libssh2
 JL_PRIVATE_LIBS-$(USE_SYSTEM_MBEDTLS) += libmbedtls libmbedcrypto libmbedx509
 JL_PRIVATE_LIBS-$(USE_SYSTEM_CURL) += libcurl
 JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBGIT2) += libgit2
-JL_PRIVATE_LIBS-$(USE_SYSTEM_ARPACK) += libarpack
 ifeq ($(USE_LLVM_SHLIB),1)
 JL_PRIVATE_LIBS-$(USE_SYSTEM_LLVM) += libLLVM
 endif

NEWS.md

@@ -1130,9 +1130,6 @@ Deprecated or removed
  `normalize`, and moved to the new `Unicode` standard library module.
  `graphemes` has also been moved to that module ([#25021]).
 
- * The functions `eigs` and `svds` have been moved to the `IterativeEigensolvers` standard
- library module ([#24714]).
-
  * Sparse array functionality has moved to the `SparseArrays` standard library module ([#25249]).
 
  * Linear algebra functionality, and specifically the `LinAlg` module has moved to the
@@ -1272,6 +1269,8 @@ Deprecated or removed
 
  * `atan2` is now a 2-argument method of `atan` ([#27248]).
 
+ * The functions `eigs` and `svds` have been moved to the `Arpack.jl` package ([#27616]).
+
 Command-line option changes
 ---------------------------
 

README.arm.md

@@ -29,13 +29,12 @@ override USE_SYSTEM_LAPACK=1
 override USE_SYSTEM_LIBM=1
 override USE_SYSTEM_GMP=1
 override USE_SYSTEM_MPFR=1
-override USE_SYSTEM_ARPACK=1
 ````
 
 The following command will install all the necessary libraries on Ubuntu:
 
 ````
-sudo apt-get install libblas3gf liblapack3gf libarpack2 libgmp3-dev \
+sudo apt-get install libblas3gf liblapack3gf libgmp3-dev \
  libmpfr-dev libblas-dev liblapack-dev cmake gcc-4.8 \
  g++-4.8 gfortran libgfortran3 m4 libedit-dev
 ````

README.md

@@ -309,7 +309,6 @@ Julia uses the following external libraries, which are automatically downloaded
 - **[LAPACK]** (>= 3.5) — library of linear algebra routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems.
 - **[MKL]** (optional) – OpenBLAS and LAPACK may be replaced by Intel's MKL library.
 - **[SuiteSparse]** (>= 4.1) — library of linear algebra routines for sparse matrices (see [note below](#suitesparse)).
-- **[ARPACK]** — collection of subroutines designed to solve large, sparse eigenvalue problems.
 - **[PCRE]** (>= 10.00) — Perl-compatible regular expressions library.
 - **[GMP]** (>= 5.0) — GNU multiple precision arithmetic library, needed for `BigInt` support.
 - **[MPFR]** (>= 3.0) — GNU multiple precision floating point library, needed for arbitrary precision floating point (`BigFloat`) support.
@@ -339,7 +338,6 @@ Julia uses the following external libraries, which are automatically downloaded
 [LAPACK]: http:https://www.netlib.org/lapack
 [MKL]: http:https://software.intel.com/en-us/articles/intel-mkl
 [SuiteSparse]: http:https://faculty.cse.tamu.edu/davis/suitesparse.html
-[ARPACK]: http:https://forge.scilab.org/index.php/p/arpack-ng
 [PCRE]: http:https://www.pcre.org
 [LLVM]: http:https://www.llvm.org
 [FemtoLisp]: https://github.com/JeffBezanson/femtolisp

base/Makefile

@@ -180,7 +180,6 @@ $(eval $(call symlink_system_library,$(LIBLAPACKNAME),LAPACK))
 endif
 $(eval $(call symlink_system_library,libgmp,GMP))
 $(eval $(call symlink_system_library,libmpfr,MPFR))
-$(eval $(call symlink_system_library,libarpack,ARPACK))
 $(eval $(call symlink_system_library,libmbedtls,MBEDTLS))
 $(eval $(call symlink_system_library,libssh2,LIBSSH2))
 $(eval $(call symlink_system_library,libcurl,CURL))

base/deprecated.jl

@@ -1720,6 +1720,8 @@ end
 
 @deprecate atan2(y, x) atan(y, x)
 
+@deprecate_moved eigs "Arpack"
+@deprecate_moved svds "Arpack"
 
 # END 0.7 deprecations
 

base/sysimg.jl

@@ -520,7 +520,6 @@ let
  :Future,
  :OldPkg,
  :LinearAlgebra,
- :IterativeEigensolvers,
  :SparseArrays,
  :SuiteSparse,
  :SharedArrays,
@@ -647,9 +646,6 @@ end
  @eval @deprecate_stdlib $(Symbol("@dateformat_str")) Dates true
  @deprecate_stdlib now Dates true
 
- @deprecate_stdlib eigs IterativeEigensolvers true
- @deprecate_stdlib svds IterativeEigensolvers true
-
  @eval @deprecate_stdlib $(Symbol("@printf")) Printf true
  @eval @deprecate_stdlib $(Symbol("@sprintf")) Printf true
 

contrib/fixup-libgfortran.sh

@@ -29,11 +29,6 @@ fi
 
 private_libdir=$1
 
-if [ ! -f "$private_libdir/libarpack.$SHLIB_EXT" ]; then
- echo "ERROR: Could not open $private_libdir/libarpack.$SHLIB_EXT" >&2
- exit 2
-fi
-
 find_shlib()
 {
  lib_path="$1"
@@ -52,7 +47,7 @@ private_libname()
 }
 
 # First, discover all the places where libgfortran/libgcc is, as well as their true SONAMES
-for lib in arpack lapack; do
+for lib in lapack; do
  if [ -f "$private_libdir/lib$lib.$SHLIB_EXT" ]; then
  # Find the paths to the libraries we're interested in. These are almost
  # always within the same directory, but we like to be general.
@@ -125,11 +120,11 @@ change_linkage()
 }
 
 # For every library that remotely touches libgfortran stuff (the libraries we
-# have copied in ourselves as well as arpack, etc...) we must
+# have copied in ourselves) we must
 # update the linkage to point to @rpath (on OSX) or $ORIGIN (on Linux) so
 # that direct links to the old libgfortran directories are instead directed
 # to the proper location, which is our $private_libdir.
-for lib in libopenblas libarpack libcholmod liblapack $SONAMES; do
+for lib in libopenblas libcholmod liblapack $SONAMES; do
  # Grab every incarnation of that library that exists within $private_libdir
  # (e.g. "libopenblas.so", and "libopenblas.so.0", etc...)
  for lib_path in $private_libdir/$lib*; do

contrib/vagrant/Vagrantfile

@@ -5,7 +5,7 @@ $script = <<SCRIPT
 cat - > /home/vagrant/.bash_aliases <<"EOF"
 export JULIA_VAGRANT_BUILD=1
 BUILDOPTS="LLVM_CONFIG=llvm-config-3.3 USE_BLAS64=0"
-for lib in LLVM ZLIB SUITESPARSE ARPACK BLAS LAPACK GMP MPFR PCRE LIBUNWIND GRISU OPENLIBM; do
+for lib in LLVM ZLIB SUITESPARSE BLAS LAPACK GMP MPFR PCRE LIBUNWIND GRISU OPENLIBM; do
  export BUILDOPTS="$BUILDOPTS USE_SYSTEM_$lib=1"
 done
 
@@ -16,7 +16,7 @@ apt-get update -qq -y
 apt-get install python-software-properties -y
 add-apt-repository ppa:staticfloat/julia-deps -y
 apt-get update -qq -y
-apt-get install g++ git make patchelf gfortran llvm-3.3 libsuitesparse-dev libopenblas-dev liblapack-dev libarpack2-dev libgmp-dev libpcre3-dev libunwind8-dev libmpfr-dev cmake -y
+apt-get install g++ git make patchelf gfortran llvm-3.3 libsuitesparse-dev libopenblas-dev liblapack-dev libgmp-dev libpcre3-dev libunwind8-dev libmpfr-dev cmake -y
 SCRIPT
 
 Vagrant.configure("2") do |config|

deps/Makefile

@@ -20,7 +20,7 @@ include $(SRCDIR)/tools/git-external.mk
 # additionally all targets should be listed in the getall target for easier off-line compilation
 # if you are adding a new target, it can help to copy an similar, existing target
 #
-# autoconf configure-driven scripts: llvm pcre arpack unwind gmp mpfr patchelf libuv curl
+# autoconf configure-driven scripts: llvm pcre unwind gmp mpfr patchelf libuv curl
 # custom Makefile rules: openlibm dsfmt suitesparse-wrapper suitesparse lapack openblas utf8proc objconv osxunwind libwhich
 # CMake libs: libgit2 libssh2 mbedtls
 #
@@ -126,10 +126,6 @@ ifeq ($(USE_SYSTEM_MPFR), 0)
 DEP_LIBS += mpfr
 endif
 
-ifeq ($(USE_SYSTEM_ARPACK), 0)
-DEP_LIBS += arpack
-endif
-
 ifeq ($(USE_GPL_LIBS), 1)
 ifeq ($(USE_SYSTEM_SUITESPARSE), 0)
 DEP_LIBS += suitesparse
@@ -172,7 +168,7 @@ uninstall: $(addprefix uninstall-, $(DEP_LIBS_STAGED))
 cleanall: $(addprefix clean-, $(DEP_LIBS))
 distcleanall: $(addprefix distclean-, $(DEP_LIBS))
  rm -rf $(build_prefix)
-getall: get-llvm get-libuv get-pcre get-openlibm get-dsfmt get-openblas get-lapack get-suitesparse get-arpack get-unwind get-osxunwind get-gmp get-mpfr get-patchelf get-utf8proc get-objconv get-mbedtls get-libssh2 get-curl get-libgit2 get-libwhich
+getall: get-llvm get-libuv get-pcre get-openlibm get-dsfmt get-openblas get-lapack get-suitesparse get-unwind get-osxunwind get-gmp get-mpfr get-patchelf get-utf8proc get-objconv get-mbedtls get-libssh2 get-curl get-libgit2 get-libwhich
 
 include $(SRCDIR)/llvm.mk
 include $(SRCDIR)/libuv.mk
@@ -181,7 +177,6 @@ include $(SRCDIR)/openlibm.mk
 include $(SRCDIR)/dsfmt.mk
 include $(SRCDIR)/objconv.mk
 include $(SRCDIR)/blas.mk
-include $(SRCDIR)/arpack.mk
 include $(SRCDIR)/utf8proc.mk
 include $(SRCDIR)/suitesparse.mk
 include $(SRCDIR)/unwind.mk