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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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@LyonsLab @EntradaTX

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  • genomics_visualizations Public

    A repository of code snippets and examples of genomics visualizations so you don't have to totally reinvent the wheel.

    R 1 1 MIT License Updated Jun 14, 2024

  • dotfiles Public

    A place to store my linux dotfiles so I can quickly configure new systems.

    Shell MIT License Updated Jun 6, 2024

  • groverj3.github.io Public

    Jeff's little corner of the web. Made with Pelican. Source code available on the "source" branch.

    HTML Updated Jun 4, 2024

  • polyglot_jupyter_example Public

    An example of setting up a minimal environment for both R and Python in a bioinformatics/data science Jupyter project.

    HTML 1 MIT License Updated Jun 4, 2024

  • minimal_nextflow_samplesheet_example Public

    A minimal RNAseq workflow, written in Nextflow, an example of using a samplesheet for metadata.

    Nextflow 7 1 MIT License Updated May 27, 2024

  • volcano_rnaseq_shiny_example Public

    An example using R shiny to create a web app that generates volcano plots.

    R MIT License Updated May 5, 2024

  • wgbs_snakemake Public

    A Snakemake workflow to automate analysis of whole-genome bisulfite sequencing data.

    Python 3 1 MIT License Updated May 22, 2022

  • shell_scripts Public

    Scripts that are useful for working in the shell.

    Shell MIT License Updated May 22, 2022

  • wgbs_tools Public

    Scripts n'such for analysis of whole-genome bisulfite sequencing.

    Python 1 MIT License Updated Mar 30, 2020

  • small_rna_tools Public

    Scripts specific to processing data from small RNA sequencing

    Python 1 MIT License Updated Mar 4, 2020

  • genomics_tools Public

    General-purporse scripts I have written for working with sequencing data.

    Python 2 MIT License Updated Dec 10, 2019

  • Flex Public

    Forked from alexandrevicenzi/Flex

    The minimalist Pelican theme.

    CSS MIT License Updated Jun 25, 2019

  • methylation_coge-tools Public archive

    Scripts to process bs-seq analyses to be used with CoGe (genomevolution.org).

    Python Updated Aug 30, 2017