Workshop in omics integration and systems biology

Improved statistical classifier for immune repertoires

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Python wrapper for wavefront alignment using WFA2-lib

🐳📊📚 Docker Images tracking the stable Galaxy releases.

Install Zsh, Oh My Zsh and plugins inside a Docker container with one line!

Nand2Tetris Software Suite - hardware simulator and CPU and VM emulators

🍦 Never use print() to debug again.

Microbiome analysis

Port of OpenAI's Whisper model in C/C++

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

A community dedicated to supporting tools for technical and scientific communication and interactive computing

A Python package for microbiome sequencing analysis with QIIME 2

Raspberry Pi Pico DIY Workshop, published by Packt

Mac setup and configuration via Ansible.

Snakemake pipeline for running HUMAnN3.6

QIIME 2 plugin for microbiome count data normalization by scaling with ranked subsampling (SRS)

A centralized location for storing curated data from cBioPortal

Development repository for the Bioconductor package 'mixOmics '

Non parametric differential abundance tests for microbiome data

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

Nextstrain build for novel coronavirus SARS-CoV-2

Course materials for BIOST561

QIIME2 plug-in for breakaway