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Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
preprocessing		preprocessing
testing		testing
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
citation.cff		citation.cff
main.nf		main.nf
nextflow.config		nextflow.config
run.sh		run.sh
run_clipseq.sh		run_clipseq.sh

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peka-eclip

This repository contains scripts to:

Download raw ENCODE eCLIP fastq files
Pre-process them to ensure they can be run through the nf-core/clipseq pipeline
Run them through the nf-core/clipseq pipeline

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Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

GPL-3.0 license

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