Commits

Commits on Sep 10, 2016

Discourage tarball 1.11 installation, prefer HEAD
tseemann
committedSep 10, 2016

Commits on Aug 25, 2016

Update BLAST+ binaries to 2.4.0
tseemann
committedAug 25, 2016
Update tbl2asn binaries to version 25.0
tseemann
committedAug 25, 2016

Commits on Jun 5, 2016

Disable /inference for --proteins and --hmms in --compliant mode (Issue tseemann#122 )
tseemann
committedJun 5, 2016

Commits on Jun 4, 2016

Add Digest::MD5 stuff to docs and cleanup
tseemann
committedJun 4, 2016
Merge pull request tseemann#148 from peterjc/patch-1
tseemann
committedJun 4, 2016
Upgrade prodigal binaries to 2.6.3 (Issue tseemann#166 )
tseemann
committedJun 4, 2016
Skip signalp if >10,000 seqs (Issue tseemann#158 )
tseemann
committedJun 4, 2016
Use Digest::MD5 to ensure mac/linux compatibility re: md5sum (Issue tseemann#167 )
tseemann
committedJun 4, 2016

Commits on Jun 2, 2016

Commits on May 11, 2016

ENA will want your EMBL flat file gzipped.
peterjc
committedMay 11, 2016
Outline of ENA submission from Prokka
peterjc
committedMay 11, 2016

Commits on Mar 11, 2016

Update expired tbl2asn binaries from 24.3 to 24.9
tseemann
committedMar 11, 2016

Commits on Feb 21, 2016

Update tbl2asn to http instead of ftp
tseemann
committedFeb 21, 2016
Major update to installation instructions
tseemann
committedFeb 21, 2016

Commits on Nov 29, 2015

Issue tseemann#87 : option --cdsrnaolap to allow tRNA/rRNA overlapping CDS
tseemann
committedNov 29, 2015
Issue tseemann#133 : sig_pep crud ends up in .FFN file
tseemann
committedNov 29, 2015
Correctly check for bundled binaries in the 3 locations
tseemann
committedNov 29, 2015
Update HAMAP.hmm database
tseemann
committedNov 29, 2015
Update core BLAST databases to Uniprot Nov-2015
tseemann
committedNov 29, 2015

Commits on Nov 28, 2015

Issue tseemann#116 : upgrade minced to avoid infinite loop in poly-N
tseemann
committedNov 28, 2015
Resolve Issue tseemann#110 : option --addmrna to add mRNA features for each CDS
tseemann
committedNov 28, 2015
Issue tseemann#129 - set phase to empty for non-CDS features
tseemann
committedNov 28, 2015
Fix Issue tseemann#143 - missing EC in GBK output
tseemann
committedNov 28, 2015
Bump tbl2asn minimum version to 24.3
tseemann
committedNov 28, 2015
Fix Issue tseemann#142 : allow --hmms to work when binary pressed only
tseemann
committedNov 28, 2015

Commits on Oct 30, 2015

Add --noanno mode and repurpose --fast for BLAST-only searching
tseemann
committedOct 30, 2015

Commits on Jul 4, 2015

Issue tseemann#125 - add total bp of contigs to log
tseemann
committedJul 4, 2015