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whole-genome phylogenomics, PhyloGWAS etc
R UpdatedOct 28, 2024 -
Darwindow Public
Forked from mennodejong1986/DarwindowUnix and R scripts to calculate and plot population-genetic estimates on a sliding-window basis, and to perform run of homozygosity (ROH) analyses.
Shell UpdatedJan 10, 2024 -
Bromeliad1776 Public
Bromeliad1776 is a target sequencing probe set for enrichment of 1776 genic regions across Bromeliaceae.
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Messy, non-generic, untested, worked at some point.
Shell UpdatedFeb 2, 2023 -
twisst Public
Forked from simonhmartin/twisstTopology weighting by iterative sampling of sub-trees
Python GNU General Public License v3.0 UpdatedJan 5, 2022 -
dfoil Public
Forked from jbpease/dfoilDFOIL: Introgression Testing for Five Taxa
Python GNU General Public License v3.0 UpdatedMay 15, 2021 -
Artemis Public
Forked from sanger-pathogens/ArtemisArtemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Java Other UpdatedJun 12, 2018 -
freebayes Public
Forked from freebayes/freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
C++ MIT License UpdatedJun 4, 2018
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