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  • Broad Institute of MIT and Harvard
  • Boston, Heidelberg
  • X @AlexJHaas

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Services and guidelines for normalizing disease terms

Python 6 Updated Nov 13, 2024

Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

Python 418 55 Updated Sep 30, 2024

Blazing 💥 fast terminal-ui for git written in rust 🦀

Rust 18,591 573 Updated Nov 15, 2024

The R Installation Manager

Rust 661 22 Updated Nov 8, 2024

Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

Python 82 2 Updated Oct 15, 2024

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Python 233 40 Updated Sep 30, 2024

Single-cell analysis in Python. Scales to >1M cells.

Python 1,920 602 Updated Nov 14, 2024

An extremely fast Python linter and code formatter, written in Rust.

Rust 32,814 1,095 Updated Nov 16, 2024

✨ Magical shell history

Rust 20,868 562 Updated Nov 9, 2024

Fish-like autosuggestions for zsh

Shell 31,463 1,871 Updated Nov 15, 2024

simple terminal UI for git commands

Go 53,119 1,853 Updated Nov 12, 2024

💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome

Dart 20 3 Updated Nov 15, 2024
Jupyter Notebook 12 2 Updated Sep 4, 2024

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Jupyter Notebook 343 47 Updated Sep 12, 2024

PyTorch code and models for V-JEPA self-supervised learning from video.

Python 2,670 254 Updated Aug 9, 2024

Program for the analysis and visualization of whole-slide images in digital pathology

C++ 618 165 Updated Sep 12, 2023

Lazily load multiscale whole-slide images with openslide and dask

Python 33 6 Updated Dec 6, 2022

Ontology for Precision Oncology Workflows at the National Center of Tumor Diseases Heidelberg

11 Updated Mar 30, 2023

QuPath extension for Segment Anything Model (SAM)

Java 91 13 Updated Sep 3, 2024