Publication-quality network visualisations in python

Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step

LangChain powered shell command generator and runner CLI

[NeurIPS 2023] Official code of "One-2-3-45: Any Single Image to 3D Mesh in 45 Seconds without Per-Shape Optimization"

Ease transition between napari and vedo

This repo includes ChatGPT prompt curation to use ChatGPT better.

Extract meshes from Optical Projective Tomography data

GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

Shape Spherical Harmonics (Descriptors, Alignment, and Symmetry)

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

Browse cell tracks from segmented sample

4D reconstruction of developmental trajectories using spherical harmonics

ClearMap 2 with WobblyStitcher, TubeMap and CellMap

An open-source application for the analysis and visualization of segmented vasculature datasets

Use ImageJ from Python

Python implementation of some of the agent based cell models of yalla (https://github.com/germannp/yalla)

Pipeline for putting surface meshes into correspondence

An awesome README template to jumpstart your projects!

shape interpolation algorithm

image stacks in python (multi-page tiff), with depth color coding.

Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning

Surface anaLysis And Modeling

HIP: C++ Heterogeneous-Compute Interface for Portability

Small Matlab to Python compiler

Spheroid models of morphogenesis for the GPU.