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Allow benchmarking from a matrix list file #503

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merged 4 commits into from
Apr 24, 2020
Merged

Allow benchmarking from a matrix list file #503

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d8d26b2
Allow benchmarking from a matrix list file thanks to a new variable.
tcojean Apr 16, 2020
1b172cd
Add some more configuration options to the benchmark script.
tcojean Apr 17, 2020
f228adb
Review updates.
tcojean Apr 21, 2020
c84b0d7
Fix typo.
tcojean Apr 21, 2020
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Allow benchmarking from a matrix list file thanks to a new variable. 
MATRIX_LIST_FILE
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@tcojean
tcojean committed Apr 24, 2020
commit d8d26b2c6cbe6e2b2b1a6d928aa2ddd852f364a0
48 changes: 47 additions & 1 deletion benchmark/run_all_benchmarks.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,20 @@ if [ ! "${DEVICE_ID}" ]; then
DEVICE_ID="0"
fi

# This allows using a matrix list file for benchmarking.
# The file should contains a suitesparse matrix on each line.
# The allowed formats to target suitesparse matrix is:
# id or group/name or name.
# Example:
# 1903
# Freescale/circuit5M
# thermal2
if [ ! "${MATRIX_LIST_FILE}" ]; then
use_matrix_list_file=0
else
use_matrix_list_file=1
fi
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################################################################################
# Utilities
Expand Down Expand Up @@ -173,9 +187,41 @@ generate_suite_sparse_input() {
EOT
}

parse_matrix_list() {
local source_list_file=$1
local benchmark_list=""
local id=0
for mtx in $(cat ${source_list_file}); do
if [[ ! "$mtx" =~ ^[0-9]+$ ]]; then
if [[ "$mtx" =~ ^[a-zA-Z0-9_-]+$ ]]; then
id=$(${SSGET} -s "[ @name == $mtx ]")
elif [[ "$mtx" =~ ^[a-zA-Z0-9_-]+/[a-zA-Z0-9_-]+$ ]]; then
local group=$(echo $mtx | cut -d"/" -f1)
local name=$(echo $mtx | cut -d"/" -f2)
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id=$(${SSGET} -s "[ @name == $name ] && [ @group == $group ]")
else
echo -e "Could not recognize entry $mtx."
fi
else
id=$mtx
fi
benchmark_list="$benchmark_list $id"
done
}

if [ $use_matrix_list_file -eq 1 ]; then
MATRIX_LIST=($(parse_matrix_list $MATRIX_LIST_FILE))
NUM_PROBLEMS=${#MATRIX_LIST[@]}
fi

LOOP_START=$((1 + (${NUM_PROBLEMS}) * (${SEGMENT_ID} - 1) / ${SEGMENTS}))
LOOP_END=$((1 + (${NUM_PROBLEMS}) * (${SEGMENT_ID}) / ${SEGMENTS}))
for (( i=${LOOP_START}; i < ${LOOP_END}; ++i )); do
for (( p=${LOOP_START}; p < ${LOOP_END}; ++p )); do
if [ $use_matrix_list_file -eq 1 ]; then
i=${MATRIX_LIST[$p]}
else
i=$p
fi
if [ "${BENCHMARK}" == "preconditioner" ]; then
break
fi
Expand Down