Fast local thickness in 3D and 2D

tomography reconstruction on GPU

Converter and utilities for the ORMIR-MIDS data format

Free open-source non-linear video editor

A Pure Python, React-style Framework for Scaling Your Jupyter and Web Apps

Light-weight system monitor for X, Wayland (sort of), and other things, too

Back In Time - An easy-to-use backup tool for GNU Linux using rsync in the back

Design of positioning, lasers, filters, detectors, fixtures for open droplet sorting

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Structure tensor 2D and 3D implementation for Python.

A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.

A napari plugin for making animations

An ITK module to compute 3D thickness

Numerical Tours of Signal Processing

Transformation to Open Science

GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

A library for performing image registration using deep learning, regularized by inverse consistency

Code created to visualize the stages of skeletonization using the Lee et al. 1994 MAT skeletonization algorithm

A set of tools for characterizing and analying 3D images of porous materials

Rich-cli is a command line toolbox for fancy output in the terminal

NumPy & SciPy for GPU

Speed up coding/extending image analysis in Python.

Code release for NeuS

🕸️ A Python interface to CGAL's meshing tools

Marching cubes (and related tools) for Python

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…

🕸️ Gmsh for Python

Image processing for many and multi-core platforms (see also https://github.com/CameraIA/F3D)

Extension to import microCT data and conduct 3D morphometrics in Slicer