What's Changed

• Fix missing prefix by @lkuchenb in #135

Full Changelog: 1.1.0...1.1.1

What's Changed

• Fix/data use permission requirement by @PMenges in #132
• Model fixes enabling use with metldata / dskit by @lkuchenb in #133
• Mark unimplemented ontologies with subset by @lkuchenb in #134

New Contributors

• @PMenges made their first contribution in #132

Full Changelog: 1.0.0...1.1.0

What's Changed

• age_at_sampling is moved to Biospecimen #128
• sequencing_process slots were modified #129
• slot descriptions, duplications, and redundancies were fixed #130
• minor changes in required fields were made #127
• version update to 1.0.0 #131

Full Changelog: 0.10.0...1.0.0

What's Changed

This is the first release after a major refactoring of the model. The key refactoring steps include

• Orienting the model on the context of submission
• Modularization of the model to enable submissions with only limited metadata
• Anchoring of files in different contexts

New Contributors

• @KerstenBreuer made their first contribution in #83
• @lkuchenb made their first contribution in #99

Full Changelog: 0.9.1...0.10.0

• has_publication removed from Project
• has_study made as list in Experiment
• introduced target regions as mandatory in Library preparation protocol
• Made library preparation kit retail name and manufacturer as optional
• Deleted has anatomical entity from Biospecimen
• Deleted has disease from Biospecimen
• Deleted has phenotypic feature from Biospecimen
• has_individual made mandatory under Biospecimen
• Introduced description to Analysis
• Introduced description as mandatory to Data Access Policy
• Introduced author, year and journal to Publication
• Defined slots for author, year, journal
• Changed type of publication year to integer in the yaml file
• updated the submission spreasheet with spreadsheet v0.9.0
• updated the mapping.json

• Added has dataset, has data access policy, has data access committee and has member to the submission class
• Changed size slot for a file as required
• Added Submission spreadsheet template to repository
• Retired custom generators in favor of GHGA specific generators
• Updated documentation

• Fixed range for Dataset slots
• Added case control status slot to Sample
• Added enum for paired end/single end read status

• Added type to appropriate classes
• Removed redundant declaration of slots in class definitions
• Changed has parameter slot to has workflow parameter
• Added data request form slot to the data access policy class
• Added ancestry, data use permission, data use modifier classes
• Added has data user permission and has data use modifier slots to data use permission class
• Added has ancestry that refers to the ancestral group an individual is part of
• Reorganized classes that are ontology classes
• Added metadata mixin to submission class
• Changed has anatomical entity to a multivalued field
• Removed has data access policy from submission class
• Added has protocol and has publication to submission class
• Added type to experiment process
• Added has attribute to experiment process
• Added concept identifier and concept name to ontology class mixin
• Added enum for age range
• Normalized representation of enum values
• Added affiliation to submission class to track the data hub/institution that is making the submission
• Fixed id and alias for publication class
• Added has file to individual class and study class
• Added GWAS to study type enum
• Added drs uri to file class
• Changed has output of experiment process class to be multivalued
• Changed has sample of experiment class to be multivalued
• Added has file to protocol class
• Added type to biospecimen class
• Removed has experiment and has analysis from study class
• Added has attribute to experiment, file, data access policy, `data access committee clases
• Added other category for 'file type enum' and 'age range enum'
• Changed has individual to optional for sample class
• Changed type to optional for dataset class
• Fixed range of size to integer