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GOA to generate new GAF/GPAD/GPI files 'go_references_species' #1522

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pgaudet opened this issue Jun 24, 2020 · 2 comments
Open

GOA to generate new GAF/GPAD/GPI files 'go_references_species' #1522

pgaudet opened this issue Jun 24, 2020 · 2 comments
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@pgaudet
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pgaudet commented Jun 24, 2020

In addition to goa_all, GOA will generate new GAF/GPAD/GPI files 'go_references_species' that correspond to the 142 species from Panther (and the substrains corresponding to those species).

List of species is in the attached file. [
Pthr15_proteome_UPs.txt
](url)

@dustine32
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I've got the PANTHER 15.0 species containing just the 142 "leaf" species and omitting the ancestor species. It's now on our data server here http:https://data.pantherdb.org/PANTHER15.0/globals/species_list.tsv and will be produced with each new PANTHER version. I will also commit this TSV to the go-site/metadata folder as go_reference_species_list.tsv.

@mugitty
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mugitty commented Sep 24, 2020

These are also available via API (http:https://pantherdb.org/services/oai/pantherdb/supportedgenomes)

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