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Issues list

Add has_primary_input to transporters/transport enhancement New feature or request
#294 by ukemi was closed Mar 13, 2024
@vanaukenk
Add has_primary_input/output to BP shapes? enhancement New feature or request
#283 by ukemi was closed Mar 13, 2024
@vanaukenk
2
Create example LinkML schema from JSON
#277 by kltm was closed Mar 23, 2023
@sierra-moxon
4
Include 'contributes to' in ShEx? enhancement New feature or request
#269 by vanaukenk was closed Dec 6, 2021
@vanaukenk
1
biological process part_of cardinality 1
#238 by goodb was closed Oct 2, 2020
13
Handling interacting taxon data - has_input to the relevant BP? question Further information is requested
#237 by vanaukenk was closed Nov 2, 2020
@vanaukenk
11
delete json-model property
#231 by goodb was closed Nov 3, 2020
3
Update ShEx to allow for more than one member for protein-containing complex
#223 by vanaukenk was closed Aug 27, 2020
fix location of blazegraph-go-lego for travis (once merged into main pipeline)
#221 by goodb was closed Apr 5, 2020
4
consider using BFO:Process in place of MF in some places.
#214 by goodb was closed Nov 3, 2020
4
investigate performance issue
#199 by goodb was closed Feb 6, 2020
@goodb
22
Add protein-containing complexes to BP relations
#178 by vanaukenk was closed Jan 16, 2020
@goodb
Need to decide on valid entity types and corresponding shapes
#173 by vanaukenk was closed Jan 13, 2020
1
6
Specify constraints for using specific combinations of GO terms and relations
#166 by vanaukenk was closed Nov 3, 2020
@vanaukenk
5
Gocamgen model with has_input should pass
#148 by dustine32 was closed Nov 3, 2020
15
Reactome conversion needs its entity ontology for shex validation
#142 by goodb was closed Oct 16, 2019
4
Proposed updates to Molecular Function shape
#137 by vanaukenk was closed Nov 3, 2020
@cmungall @balhoff
@pgaudet @thomaspd
19
Remove MacromolecularMachine shape? question Further information is requested
#135 by balhoff was closed Aug 8, 2019
1
python validator doesn't seem to test all files
#133 by balhoff was closed Nov 3, 2020
@cmungall
2
Annotating multi-organism processes question Further information is requested
#129 by vanaukenk was closed Nov 3, 2020
2
Add standard shape map
#70 by balhoff was closed Jul 24, 2019
3
Can MFs be 'part of' other MFs?
#52 by vanaukenk was closed Nov 18, 2020
1
12
Create test cases for different types of molecular entities
#50 by pgaudet was closed Jan 10, 2020
1
Plan for July 2019
#45 by cmungall was closed Oct 16, 2019
7 tasks done
Decide if/how to specify negation
#41 by vanaukenk was closed Jul 17, 2019
@balhoff
8
ProTip! Adding no:label will show everything without a label.