cellular response -> 'occurs in' some cell

[dosumis]

We have general agreement that 'occurs in' some cell can be used as a differentium for 'cellular' in the response to stimulus branch.

However, there are 431 terms to fix. Not great to do by hand. And the payback for doing so is not large as most inference we want comes from ChEBI anyway. Might be worth it if/when we have some automated way to apply patterns.

Pattern detail here http:https://wiki.geneontology.org/index.php/Ontology_meeting_2016-01-21#Logical_definitions_for_.27response_to_chemical.27_terms

[paolaroncaglia]

Great, thanks David for recording this. I'll assign to you so it doesn't get lost... in the fullness of time :-)

[tberardini]

If we end up dropping GO:cell for CL:cell, this issue will be affected. see #11414

[cmungall]

to follow up, we now use CL:

id: GO:1990748
name: cellular detoxification
namespace: biological_process
def: "Any process carried out at the cellular level that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance." [GOC:vw]
is_a: GO:0009987 ! cellular process
intersection_of: GO:0098754 ! detoxification
intersection_of: occurs_in CL:0000000 ! cell

FWIW, this DP does not capture what is intended by cellular-X. But let's just first make sure everything conforms to some DP. I want to merged all cellular-Xs into Xs. But a necessaru pre-requisite is consistent patterns