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Darwin Core Archive of the Official Lists and Indexes of Names in Zoology

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ICZN-lists

Join the chat at https://gitter.im/gbif/iczn-lists This repository aims to create a valid Darwin Core archive of all names listed in the Official Lists and Indexes of Names in Zoology from the International Commission on Zoological Nomenclature (ICZN). The official source files are available at https://iczn.org/content/official-lists-indexes-1

The dataset has been registered with GBIF here: https://www.gbif.org/dataset/80b4b440-eaca-4860-aadf-d0dfdd3e856e

Files

  • eml.xml a simple metadata descriptor in the EML format.
  • meta.xml a darwin core archive descriptor file that explains the data file columns
  • postgres.sql a SQL schema defining 2 basic tables both sharing the same identifier column. names is the parsed result while raw contains intermediate parsing results.
  • names.txt all list names and their attributes parsed into Darwin Core compliant format together with a plain text version of the entire publication entry
  • raw.txt all list names in their raw format (column html) and various intermediate parsing results
  • opinions.txt a list of opinions with their references and links out. The same opinion can have multiple entries, i.e. references

PostgreSQL Schema

Use the sql schema file postgres.sql to create a new tables for the names data.

import

\copy names from 'names.txt' NULL as ''
\copy raw from 'raw.txt' NULL as ''
\copy opinion from 'opinions.txt' NULL as ''

export

\copy (select * from names order by id) to 'names.txt' NULL as ''
\copy (select * from raw order by id) to 'raw.txt' NULL as ''
\copy (select * from opinion order by number) to 'opinions.txt' NULL as ''

\copy (select id,canonical,authorship,datepublished,originalcitation,status,classification,phylum,class_,order_,rank,typestatus,typename,typespecimen,typedesignatedby,typedesignationtype,gender,sic,synopsis,direction,opinions,rlpcomments,plaintext from names order by id) to 'names.txt' NULL as ''

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