A script for plotting:
- Scaled two and three set venn diagrams
- Unscaled four and five set venn diagrams
- Profile, summary and tabular output for all sets including (six sets or more)
numpyscipymatplotlibmatplotlib-venn
[gjain@gjvbx venn_plots ] $ python scripts/venn_plots.py
***********************************************
- PROGRAM: venn_plots.py
- CONTACT: Gaurav Jain([email protected])
***********************************************
usage: venn_plots.py [-h] -if --input_file [-of --output_file] [-od --output_dir] [-cl --cols] [-ci]
arguments:
-h, --help show this help message and exit
-if --input_file *Input file (tab separated) with headers
-of --output_file Output file
-od --output_dir Output directory
-cl --cols Comma separated list of columns you want to use to draw venn diagrams: "col0,col1,col2 col5,col9"
for example: -cl="0,1,2,5,9"
Its ZERO based indexing i.e. Count the first column as zero
-ci, --caseInsensitive if set, use case insensitive comparisions
----------------- SAMPLE USAGE ------------------
- python scripts/venn_plots.py -if=test/test_input.txt -of=test/01_two_sets_venn.txt -cl=0,1
- python scripts/venn_plots.py -if=test/test_input.txt -of=test/02_three_sets_venn.txt -cl=0,1,3
- python scripts/venn_plots.py -if=test/test_input.txt -of=test/03_four_sets_venn.txt -cl=0,1,4,6
- python scripts/venn_plots.py -if=test/test_input.txt -of=test/04_five_sets_venn.txt -cl=1,4,5,6,7
- python scripts/venn_plots.py -if=test/test_input.txt -of=test/05_eight_sets_venn.txt
-------------------------------------------------
| Set1 | Set2 | Set3 | Set4 | Set5 | Set6 | Set7 | Set8 |
|---|---|---|---|---|---|---|---|
| 34 | 50 | 49 | 4 | 35 | 11 | 44 | 20 |
| 45 | 14 | 5 | 43 | 40 | 23 | 15 | 0 |
| 7 | 27 | 27 | 1 | 25 | 16 | 16 | 48 |
| 28 | 31 | 42 | 11 | 17 | 40 | 35 | 37 |
| 26 | 13 | 44 | 27 | 9 | 36 | 23 | 26 |
| 15 | 28 | 34 | 22 | 29 | 12 | 38 | 18 |
| 8 | 39 | 25 | 13 | 4 | 13 | 17 | 22 |
| 23 | 5 | 15 | 6 | 38 | 46 | 24 | 12 |
| 18 | 9 | 16 | 50 | 48 | 3 | 39 | 24 |
| 1 | 42 | 14 | 3 | 32 | 14 | 46 | 25 |
| 49 | 3 | 1 | 34 | 33 | 48 | 31 | 49 |
| 12 | 22 | 37 | 35 | 50 | 50 | 22 | 1 |
| 38 | 4 | 11 | 20 | 27 | 42 | 33 | 19 |
| 37 | 15 | 31 | 44 | 12 | 34 | 4 | 21 |
| 42 | 33 | 50 | 17 | 19 | 47 | 5 | 2 |
| 33 | 26 | 20 | 25 | 0 | 19 | 50 | 42 |
| 40 | 19 | 12 | 36 | 7 | 14 | 23 | |
| 22 | 0 | 11 | 22 | 8 | |||
| 20 | 41 | 22 | 24 | 31 | |||
| 21 | 4 | 28 | |||||
| 4 | 10 |
-
Plots (png and pdf) for 2 to 5 sets
-
Summary file:
- Set1 = 14 - Set2 = 9 - Set1|Set2 = 7 -
Profile file:
> Set1 = 14 1 12 18 20 21 23 34 37 38 40 45 49 7 8 > Set2 = 9 13 14 27 3 31 39 5 50 9 > Set1|Set2 = 7 15 22 26 28 33 4 42 -
Tabular file (1=PRESENT, 0 = ABSENT):
#element Set1 Set2 28 1 1 26 1 1 27 0 1 20 1 0 21 1 0 22 1 1 49 1 0 45 1 0 42 1 1 40 1 0 1 1 0 3 0 1 5 0 1 4 1 1 7 1 0 9 0 1 8 1 0 13 0 1 38 1 0 39 0 1 12 1 0 15 1 1 14 0 1 33 1 1 18 1 0 31 0 1 23 1 0 37 1 0 50 0 1 34 1 0