Skip to content
@gao-lab

Gao Lab

Bioinformatics and Computational Genomics

Popular repositories Loading

  1. GLUE GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 358 52

  2. Guideline-for-Computational-Biology-and-Bioinformatics Guideline-for-Computational-Biology-and-Bioinformatics Public

    301 92

  3. Cell_BLAST Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 82 13

  4. SLAT SLAT Public

    Spatial-Linked Alignment Tool

    Python 71 7

  5. CPC2_standalone CPC2_standalone Public

    Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

    Python 20 12

  6. ePooling ePooling Public

    Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding

    Python 16 3

Repositories

Showing 10 of 27 repositories
  • SEERS Public
    gao-lab/SEERS’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 14, 2024
  • SVEN Public

    Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

    gao-lab/SVEN’s past year of commit activity
    Python 1 0 0 0 Updated Aug 12, 2024
  • Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    gao-lab/Cell_BLAST’s past year of commit activity
    Python 82 MIT 13 6 0 Updated Jul 23, 2024
  • gao-lab/SPARKLE’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 7, 2024
  • SLAT Public

    Spatial-Linked Alignment Tool

    gao-lab/SLAT’s past year of commit activity
    Python 71 MIT 7 1 1 Updated Jun 8, 2024
  • GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    gao-lab/GLUE’s past year of commit activity
    Python 358 MIT 52 14 2 Updated Feb 23, 2024
  • SLE-ImmuneAtlas Public

    scRNA and scVDJ analysis for SLE samples

    gao-lab/SLE-ImmuneAtlas’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Sep 24, 2023
  • ProjectManagementWorkshop Public template

    This is a demo repo for project management in Technology Workshop 2023

    gao-lab/ProjectManagementWorkshop’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 25, 2023
  • gao-lab/LOST_and_FOUND’s past year of commit activity
    Python 7 1 0 0 Updated Apr 7, 2023
  • Markonv_figures Public

    Markonv: a novel convolutional layer for identifying inter-positional correlations effectively and efficiently This is the repository for reproducing figures and tables in the paper.

    gao-lab/Markonv_figures’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Dec 11, 2022