Pairwise whole genome aligner

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

Caching Decorator

Algorithmically create or extend categorical colour palettes

Visualize and annotate genomic coverage with ggplot2

🧬 gget enables efficient querying of genomic reference databases

A collection of tools for Hi-C data analysis

Notes on single-cell Hi-C technologies, tools, and data

A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

A Julia package for variational Bayesian topic modeling.

T/B cell receptor sequencing analysis notes

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Matplotlib style for scientific publications

A Collection of Variational Autoencoders (VAE) in PyTorch.

Deep probabilistic analysis of single-cell and spatial omics data

Uniform Manifold Approximation and Projection

Toolkit for processing sequences in FASTA/Q formats

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology