There is no installation required.
R libraries parallel and simclone github.com/sdentro/simclone
A slurm-based cluster to submit the runs as jobs in submitSimulateAll.R
run deriveGrid.R to generate the grid design:
Rscript derivegrid.R
run submitSimulateAll.R to simulate all tumours from the grid design (require simclone library):
Rscript submitSimulateAll.R
This will submit one job per simulated sample on a slurm-based cluster.
Each sample run will write the outputs generate by the simclone main function github.com/sdentro/simclone