robertdj : GeneralizedSampling.jl, bcbi : PubMedMiner.jl

fp4code · Jul 21, 2016 · f72ee41 · f72ee41
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diff --git a/OpenData.md b/OpenData.md
@@ -35,6 +35,7 @@
 + [ModelerToolbox.jl](https://github.com/spencerlyon2/ModelerToolbox.jl) :: Utilities for working with many different versions/parameterizations of models.
 + [NetflixPrize.jl](https://github.com/jiahao/NetflixPrize.jl) :: Julia package for handling the Netflix Prize data set of 2006.
 + [PublicSuffix.jl](https://github.com/tanmaykm/PublicSuffix.jl) :: Julia Interface for working with the [Public Suffix List](https://publicsuffix.org/).
++ [PubMedMiner.jl](https://github.com/bcbi/PubMedMiner.jl) :: Return and analyze a PubMed/Medline search using MESH descriptors and their corresponding UMLS concept. 
 + [RDatasets.jl](https://github.com/johnmyleswhite/RDatasets.jl) :: Julia package for loading many of the datasets available in R.
 + [Socrata.jl](https://github.com/drewgendreau/Socrata.jl) :: An API wrapper for accessing the [Socrata Open Data API](https://dev.socrata.com) and importing data into a DataFrame. Socrata is an open data platform used by many local and State governments as well as by the Federal Government in USA. 
 + [UCIMLRepo.jl](https://github.com/siddhantjain/UCIMLRepo.jl) :: A small package to allow for easy access and download of datasets from UCI ML repository.

diff --git a/Statistics.md b/Statistics.md
@@ -256,9 +256,6 @@ An umbrella group for Julia-based optimization-related projects, with its own [m
 + [Isotonic.jl](https://github.com/ajtulloch/Isotonic.jl) :: This implements several algorithms for isotonic regression in Julia.
  + @ajtulloch's blog on [speeding up Isotonic Regression with Julia](https://tullo.ch/articles/python-vs-julia/) and the [IJulia notebook](https://nbviewer.ipython.org/url/gist.githubusercontent.com/ajtulloch/9485996/raw/94b3d0e6bd67256f1f02eebb1463365dbc8b64fc/Julia.ipynb)
 + [ITC.jl](https://github.com/johnmyleswhite/ITC.jl) :: Code for modeling intertemporal choice in Julia.
-+ [Jackknife.jl](https://github.com/ararslan/Jackknife.jl) :: [Jackknife resampling](https://en.wikipedia.org/wiki/Jackknife_resampling) and estimation in Julia.
-+ [JAGS.jl](https://github.com/olofsen/JAGS.jl) :: A Julia interface to JAGS, to provide a shared library as an interface between Julia and JAGS - Just another Gibbs sampler.
-+ [Jags.jl](https://github.com/goedman/Jags.jl) :: Julia package for using Just another Gibbs sampler.
 + [KernSmooth.jl](https://github.com/lendle/KernSmooth.jl) :: A direct port of the R package KernSmooth, (v2.23-10.), carrying an unlimited license.
 + [KLDivergence.jl](https://github.com/johnmyleswhite/KLDivergence.jl) :: KL-divergence estimation in Julia.
 + [LARS.jl](https://github.com/simonster/LARS.jl) :: Least angle regression.
@@ -280,7 +277,6 @@ An umbrella group for Julia-based optimization-related projects, with its own [m
 + [Queries](https://github.com/carljv/Queries) :: Composable queries for Julia DataFrames.
 + [RandomProcesses.jl](https://github.com/johnmyleswhite/RandomProcesses.jl) :: Random processes (CRP, CRT) in Julia.
 + [RBM.jl](https://github.com/kzahedi/RBM.jl)
-+ [Resampling.jl](https://github.com/johnmyleswhite/Resampling.jl) :: Tools for resampling data.
 + [Ridge.jl](https://github.com/johnmyleswhite/Ridge.jl) :: Ridge regression and classification.
 + [RunningStats.jl](https://github.com/johnmyleswhite/RunningStats.jl) :: Julia translation of John D. Cook's code for running moment statistics and univariate regressions.
 + [SDP.jl](https://github.com/trthatcher/SDP.jl) by @trthatcher :: Statistical Data Processing.
@@ -297,6 +293,7 @@ An umbrella group for Julia-based optimization-related projects, with its own [m
 + [What’s Wrong with Statistics in Julia?](https://www.johnmyleswhite.com/notebook/2014/11/29/whats-wrong-with-statistics-in-julia/)
 
 
+
 ## Org-[JuliaStats](https://JuliaStats.github.io)
 + [ConjugatePriors.jl](https://github.com/JuliaStats/ConjugatePriors.jl) :: A package to support conjugate prior distributions.
 + [DataFrames.jl](https://github.com/JuliaStats/DataFrames.jl) :: A Library for working with tabular data in Julia.
@@ -314,7 +311,6 @@ An umbrella group for Julia-based optimization-related projects, with its own [m
 + [PGM.jl](https://github.com/JuliaStats/PGM.jl) :: A Julia framework for probabilistic graphical models.
 + [Rmath.jl](https://github.com/JuliaStats/Rmath.jl) :: Archive of functions that emulate R's d-p-q-r functions for probability distributions.
 + [RmathDist.jl](https://github.com/JuliaStats/RmathDist.jl) :: This package provides a julia interface to the distributions provided by the standalone Rmath library, which is part of the R project for statistical computing.
-+ [Sampling.jl](https://github.com/JuliaStats/Sampling.jl) :: Basic sampling algorithms package, that provides algorithmic support to statistics-related packages, including [Distributions.jl](https://github.com/JuliaStats/Distributions.jl).
 + [StatsBase.jl](https://github.com/JuliaStats/StatsBase.jl) :: The Stats meta-package for basic statistics functions for Julia.
  * _DOCS_:: Documentation available at [statsbasejl.readthedocs.org](https://statsbasejl.readthedocs.org/en/latest/)
 + [StreamStats.jl](https://github.com/johnmyleswhite/StreamStats.jl) :: Compute statistics over data streams.
@@ -377,6 +373,14 @@ An umbrella group for Julia-based optimization-related projects, with its own [m
 + [MCMCModels.jl](https://github.com/scidom/MCMCModels.jl) :: Scratch space for hosting temporarily current model specification for MCMC inference.
 + [SimpleMCMC.jl](https://github.com/fredo-dedup/SimpleMCMC.jl) :: Small framework for MCMC sampling and maximization on user-defined models.
 
+## Sampling 
++ [GeneralizedSampling.jl](https://github.com/robertdj/GeneralizedSampling.jl) :: Generalized Sampling in Julia
++ [Jackknife.jl](https://github.com/ararslan/Jackknife.jl) :: [Jackknife resampling](https://en.wikipedia.org/wiki/Jackknife_resampling) and estimation in Julia.
++ [JAGS.jl](https://github.com/olofsen/JAGS.jl) :: A Julia interface to JAGS, to provide a shared library as an interface between Julia and JAGS - Just another Gibbs sampler.
++ [Jags.jl](https://github.com/goedman/Jags.jl) :: Julia package for using Just another Gibbs sampler.
++ [Resampling.jl](https://github.com/johnmyleswhite/Resampling.jl) :: Tools for resampling data.
++ [Sampling.jl](https://github.com/JuliaStats/Sampling.jl) :: Basic sampling algorithms package, that provides algorithmic support to statistics-related packages, including [Distributions.jl](https://github.com/JuliaStats/Distributions.jl).
+
 ## Statistical Tests
 + [RobustStats.jl](https://github.com/mrxiaohe/RobustStats.jl) :: A collection of robust statistical tests based on the R package WRS (R-Forge repository) by Rand Wilcox.
 + [StatTests.jl](https://github.com/i-kiwamu/StatTests.jl) :: [A set of statistical tests for Julia.

diff --git a/db.csv b/db.csv
@@ -889,7 +889,7 @@ Mathematics,MATH,Hecke.jl,https://github.com/thofma/Hecke.jl),
 Mathematics,MATH,Hexagons.jl,https://github.com/dcjones/Hexagons.jl,Useful tools for working with hexagonal grids.
 Mathematics,MATH,MTH229.jl,https://github.com/mth229/MTH229.jl,Helper files for using Julia with MTH229.
 Mathematics,MATH,MathToolkit.jl,https://github.com/baruchel/MathToolkit.jl,A Julia package providing various functions mainly for the purpose of experimental mathematics.
-Mathematics,MATH,Measurements.jl,https://github.com/giordano/Measurements.jl,Error
+Mathematics,MATH,Measurements.jl,https://github.com/giordano/Measurements.jl,Error propagation calculator and library. It supports real and complex numbers with uncertainty, arbitrary precision calculations, and operations with arrays.
 Mathematics,MATH,Measures.jl,https://github.com/dcjones/Measures.jl,Unified measure and coordinates types.
 Mathematics,MATH,MPFR.jl,https://github.com/andrioni/MPFR.jl,A Julia package for the GNU MPFR library.
 Mathematics,MATH,Multicombinations.jl,https://github.com/jlep/Multicombinations.jl,An iterator for k-combinations with repetitions, k-multicombinations, k-multisubsets.
@@ -914,6 +914,7 @@ Mathematics,MATH,univariate__opt.jl,https://github.com/matthewclegg/univariate_o
 Mathematics,MATH,Unums.jl,https://github.com/tbreloff/Unums.jl,Unum (Universal Number) types and operations. {Usable: 1, Robust: 1, Active: 1}
 Mathematics,MATH,UnumTests.jl,https://github.com/goedman/UnumTests.jl,Some experiments with Unums. {#NonCuratedPackage}
 Mathematics,MATH,utils.jl,https://github.com/juho-lee/utils.jl,basic utilities needed for scientific coding with julia.
+Mathematics,[ComputerArithmetic](https://en.wikipedia.org/wiki/Category:Computer_arithmetic),Calc.jl,https://github.com/tshort/Calc.jl],An RPN calculator for the Julia REPL.
 Mathematics,[ComputerArithmetic](https://en.wikipedia.org/wiki/Category:Computer_arithmetic),DeepConvert.jl,https://github.com/jlapeyre/DeepConvert.jl,This package provides convenient literal construction of values of large data types.
 Mathematics,[ComputerArithmetic](https://en.wikipedia.org/wiki/Category:Computer_arithmetic),ErrorFreeArith.jl,https://github.com/J-Sarnoff/ErrorFreeArith.jl,Error-Free transformations for arithmetic ops.
 Mathematics,[FloatingPoint](https://en.wikipedia.org/wiki/Category:Floating_point),ArbFloats.jl,https://github.com/Jeffrey-Sarnoff/ArbFloats.jl, Arb available as an extended precision floating point context.
@@ -1177,10 +1178,12 @@ OpenData,SOFTWARE,Maker.jl,https://github.com/tshort/Maker.jl,A tool like `make`
 OpenData,SOFTWARE,ModelerToolbox.jl,https://github.com/spencerlyon2/ModelerToolbox.jl,Utilities for working with many different versions/parameterizations of models.
 OpenData,SOFTWARE,NetflixPrize.jl,https://github.com/jiahao/NetflixPrize.jl,Julia package for handling the Netflix Prize data set of 2006.
 OpenData,SOFTWARE,PublicSuffix.jl,https://github.com/tanmaykm/PublicSuffix.jl,Julia Interface for working with the [Public Suffix List](https://publicsuffix.org/).
-OpenData,SOFTWARE,RDatasets.jl,https://github.com/johnmyleswhite/RDatasets.jl,Julia package for loading many of the data sets available in R.
+OpenData,SOFTWARE,PubMedMiner.jl,https://github.com/bcbi/PubMedMiner.jl,Return and analyze a PubMed/Medline search using MESH descriptors and their corresponding UMLS concept.
+OpenData,SOFTWARE,RDatasets.jl,https://github.com/johnmyleswhite/RDatasets.jl,Julia package for loading many of the datasets available in R.
 OpenData,SOFTWARE,Socrata.jl,https://github.com/drewgendreau/Socrata.jl,An API wrapper for accessing the [Socrata Open Data API](https://dev.socrata.com) and importing data into a DataFrame. Socrata is an open data platform used by many local and State governments as well as by the Federal Government in USA.
 OpenData,SOFTWARE,UCIMLRepo.jl,https://github.com/siddhantjain/UCIMLRepo.jl,A small package to allow for easy access and download of datasets from UCI ML repository.
 OpenData,SOFTWARE,WorldBankData.jl,https://github.com/4gh/WorldBankData.jl,The World Bank provides free access to data about development at data.worldbank.org.
+OpenData,DataScience,jplyr.jl,https://github.com/davidagold/jplyr.jl,Data manipulation facilities for Julia.
 OpenData,[ASTRONOMY](https://en.wikipedia.org/wiki/Category:Astronomy),NASA Open DataSets,https://open.nasa.gov/,To solve looming challenges here on Earth using NASA data, [tools, and resources](https://github.com/nasa).
 OpenData,AstroPhysics,sndatasets,https://github.com/kbarbary/sndatasets,Download and normalize published supernova photometric data.
 OpenData,BIOLOGY,P's list of [biological databases,https://en.wikipedia.org/wiki/List_of_biological_databases),
@@ -1753,8 +1756,6 @@ Statistics,STATISTICS,Hotspot.jl,https://github.com/jzelner/Hotspot.jl,Hotspot m
 Statistics,STATISTICS,HyperLogLog.jl,https://github.com/johnmyleswhite/HyperLogLog.jl,A simple HyperLogLog implementation in Julia.
 Statistics,STATISTICS,Isotonic.jl,https://github.com/ajtulloch/Isotonic.jl,This implements several algorithms for isotonic regression in Julia.
 Statistics,STATISTICS,ITC.jl,https://github.com/johnmyleswhite/ITC.jl,Code for modeling intertemporal choice in Julia.
-Statistics,STATISTICS,JAGS.jl,https://github.com/olofsen/JAGS.jl,A Julia interface to JAGS, to provide a shared library as an interface between Julia and JAGS - Just another Gibbs sampler.
-Statistics,STATISTICS,Jags.jl,https://github.com/goedman/Jags.jl,Julia package for using Just another Gibbs sampler.
 Statistics,STATISTICS,KernSmooth.jl,https://github.com/lendle/KernSmooth.jl,A direct port of the R package KernSmooth, (v2.23-10.), carrying an unlimited license.
 Statistics,STATISTICS,KLDivergence.jl,https://github.com/johnmyleswhite/KLDivergence.jl,KL-divergence estimation in Julia.
 Statistics,STATISTICS,LARS.jl,https://github.com/simonster/LARS.jl,Least angle regression.
@@ -1776,7 +1777,6 @@ Statistics,STATISTICS,QuantileRegression.jl,https://github.com/vincentarelbundoc
 Statistics,STATISTICS,Queries,https://github.com/carljv/Queries,Composable queries for Julia DataFrames.
 Statistics,STATISTICS,RandomProcesses.jl,https://github.com/johnmyleswhite/RandomProcesses.jl,Random processes (CRP, CRT) in Julia.
 Statistics,STATISTICS,RBM.jl,https://github.com/kzahedi/RBM.jl,
-Statistics,STATISTICS,Resampling.jl,https://github.com/johnmyleswhite/Resampling.jl,Tools for resampling data.
 Statistics,STATISTICS,Ridge.jl,https://github.com/johnmyleswhite/Ridge.jl,Ridge regression and classification.
 Statistics,STATISTICS,RunningStats.jl,https://github.com/johnmyleswhite/RunningStats.jl,Julia translation of John D. Cook's code for running moment statistics and univariate regressions.
 Statistics,STATISTICS,SDP.jl,https://github.com/trthatcher/SDP.jl) by @trthatche,Statistical Data Processing.
@@ -1785,6 +1785,7 @@ Statistics,STATISTICS,SpecialFunctions.jl,https://github.com/nolta/SpecialFuncti
 Statistics,STATISTICS,TopicModels.jl,https://github.com/slycoder/TopicModels.jl,TopicModels for Julia.
 Statistics,STATISTICS,VCOV.jl,https://github.com/gragusa/VCOV.jl,Build StatusHeteroskedasticity and Autocorrelation Consistent Covariance Matrix Estimation for Julia.
 Statistics,STATISTICS,VStatistic.jl,https://github.com/dostodabsi/VStatistic.jl,Implements the v-statistic, a measure that compares the estimation accuracy of the ordinary least squares estimator against a random benchmark.
+Statistics,Resources,StatsLearningByExample.jl,https://github.com/scidom/StatsLearningByExample.jl,Learn Julia via Examples.
 Statistics,Resources,Biostat 778,https://github.com/rdpeng/biostat778_notes,Advanced Statistical Computing.
 Statistics,Resources,DCStats.jl,https://github.com/johnmyleswhite/DCStats.jl,IJulia Notebooks that provide a brief introduction to Julia for statistical programming.
 Statistics,Resources,What’s Wrong with Statistics in Julia?,https://www.johnmyleswhite.com/notebook/2014/11/29/whats-wrong-with-statistics-in-julia/,
@@ -1802,7 +1803,6 @@ Statistics,Org-[JuliaStats](https://JuliaStats.github.io),MLBase.jl,https://gith
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),PGM.jl,https://github.com/JuliaStats/PGM.jl,A Julia framework for probabilistic graphical models.
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),Rmath.jl,https://github.com/JuliaStats/Rmath.jl,Archive of functions that emulate R's d-p-q-r functions for probability distributions.
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),RmathDist.jl,https://github.com/JuliaStats/RmathDist.jl,This package provides a julia interface to the distributions provided by the standalone Rmath library, which is part of the R project for statistical computing.
-Statistics,Org-[JuliaStats](https://JuliaStats.github.io),Sampling.jl,https://github.com/JuliaStats/Sampling.jl,Basic sampling algorithms package, that provides algorithmic support to statistics-related packages, including [Distributions.jl](https://github.com/JuliaStats/Distributions.jl).
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),StatsBase.jl,https://github.com/JuliaStats/StatsBase.jl,The Stats meta-package for basic statistics functions for Julia.
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),StreamStats.jl,https://github.com/johnmyleswhite/StreamStats.jl,Compute statistics over data streams.
 Statistics,Org-[JuliaStats](https://JuliaStats.github.io),SVM.jl,https://github.com/JuliaStats/SVM.jl,Native Julia implementations of standard SVM algorithms.
@@ -1849,6 +1849,12 @@ Statistics,[MonteCarlo](https://en.wikipedia.org/wiki/Monte_Carlo_method)Method,
 Statistics,[MonteCarlo](https://en.wikipedia.org/wiki/Monte_Carlo_method)Method,MCMCExampleRepository.jl,https://github.com/goedman/MCMCExampleRepository.jl,Repository for MCMC Julia examples.
 Statistics,[MonteCarlo](https://en.wikipedia.org/wiki/Monte_Carlo_method)Method,MCMCModels.jl,https://github.com/scidom/MCMCModels.jl,Scratch space for hosting temporarily current model specification for MCMC inference.
 Statistics,[MonteCarlo](https://en.wikipedia.org/wiki/Monte_Carlo_method)Method,SimpleMCMC.jl,https://github.com/fredo-dedup/SimpleMCMC.jl,Small framework for MCMC sampling and maximization on user-defined models.
+Statistics,Sampling,GeneralizedSampling.jl,https://github.com/robertdj/GeneralizedSampling.jl,Generalized Sampling in Julia
+Statistics,Sampling,Jackknife.jl,https://github.com/ararslan/Jackknife.jl,[Jackknife resampling](https://en.wikipedia.org/wiki/Jackknife_resampling) and estimation in Julia.
+Statistics,Sampling,JAGS.jl,https://github.com/olofsen/JAGS.jl,A Julia interface to JAGS, to provide a shared library as an interface between Julia and JAGS - Just another Gibbs sampler.
+Statistics,Sampling,Jags.jl,https://github.com/goedman/Jags.jl,Julia package for using Just another Gibbs sampler.
+Statistics,Sampling,Resampling.jl,https://github.com/johnmyleswhite/Resampling.jl,Tools for resampling data.
+Statistics,Sampling,Sampling.jl,https://github.com/JuliaStats/Sampling.jl,Basic sampling algorithms package, that provides algorithmic support to statistics-related packages, including [Distributions.jl](https://github.com/JuliaStats/Distributions.jl).
 Statistics,StatisticalTests,RobustStats.jl,https://github.com/mrxiaohe/RobustStats.jl,A collection of robust statistical tests based on the R package WRS (R-Forge repository) by Rand Wilcox.
 Statistics,StatisticalTests,StatTests.jl,https://github.com/i-kiwamu/StatTests.jl,[A set of statistical tests for Julia.
 Statistics,[TimeSeries](https://en.wikipedia.org/wiki/Time_series)Analysis,DependentBootstrap,https://github.com/colintbowers/DependentBootstrap.jl,A module that implements several varieties of the dependent statistical bootstrap as well as the corresponding block-length selection procedures.