Update Vignettes

[TahminaMojumder]

No description provided.

[TahminaMojumder]

should there be an example for convergence check??

BayesianTools/BayesianTools/vignettes/BayesianTools.Rmd

Line 154 in 92b3ca9

gelmanDiagnostics(out, plot = T)

There are several places where eval = F - is this intentional?

BayesianTools/BayesianTools/vignettes/BayesianTools.Rmd

Line 204 in 92b3ca9

## Definition of likelihood function

BayesianTools/BayesianTools/vignettes/BayesianTools.Rmd

Line 225 in 92b3ca9

## n = Number of cores

BayesianTools/BayesianTools/vignettes/BayesianTools.Rmd

Line 237 in 92b3ca9

```{r, eval = FALSE}

BayesianTools/BayesianTools/vignettes/BayesianTools.Rmd

Line 287 in 92b3ca9

```{r, eval = FALSE}

[florianhartig]

Hi Tahmina,

The Gelman Diagnostics are the convergence checks - if you want, you can clarify this in the text.

The eval = F is correct, the code is not supposed to run - if you think that clarifies things for the reader, you could add a comment that this is not excecutable R code, but just pseudocode that shows the principle in which one should program the functions.

[TahminaMojumder]

Write here some links that were useful to me to understand MCMC

[florianhartig]

Hi @TahminaMojumder , I'm looking at merging this branch, but can you still revert all line breaks that you added? I think this is easier for the future!

[florianhartig]

Hi @TahminaMojumder - I think you said you changed back the line breaks, but I still see them - did you commit this?

[TahminaMojumder]

For Rmd files, when I changed from source to visual to source again. Then the changes in line break I made changed again to previous version. That is how the changes I made was not committed. Now I have fixed this.