Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Solve detritus in temp directory problem #246

Merged
merged 6 commits into from
Jan 30, 2023
Merged

Solve detritus in temp directory problem #246

Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
8310145
Update test-samplers.R
florianhartig Jan 29, 2023
3bd250a
help simplifications
florianhartig Jan 29, 2023
2c3bbd6
Delete BayesianTools.Rmd
florianhartig Jan 30, 2023
2aeef93
updates
florianhartig Jan 30, 2023
b9ea089
updates
florianhartig Jan 30, 2023
21b4fe7
Removed cluster call
florianhartig Jan 30, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Removed cluster call 
This was probably the main problem behind #246
  • Loading branch information
@florianhartig
florianhartig committed Jan 30, 2023
commit 21b4fe79fc7a762ab763daa6cafbfd7d6578ade2
1 change: 0 additions & 1 deletion BayesianTools.Rproj
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,6 @@ LaTeX: pdfLaTeX

BuildType: Package
PackageUseDevtools: Yes
PackageCleanBeforeInstall: No
PackagePath: BayesianTools
PackageInstallArgs: --no-multiarch --with-keep.source
PackageCheckArgs: --as-cran
Expand Down
4 changes: 2 additions & 2 deletions BayesianTools/vignettes/InterfacingAModel.Rmd
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -243,7 +243,7 @@ mymodel<-function(x){

To start a parallel computation, we will first need to create a cluster object. Here we will initiate a cluster with 2 CPU's.

```{r}
```{r, eval = F}

library(parallel)
cl <- makeCluster(2)
Expand All @@ -257,7 +257,7 @@ runParallel(c(1,2))

You could use this principle to build your own parallelized likelihood. However, something very similar to the previous loop is automatized in BayesianTools. You can directly create a parallel model evaluation function with the function generateParallelExecuter, or alternatively directly in the createBayesianSetup

```{r}
```{r, eval = F}
library(BayesianTools)
parModel <- generateParallelExecuter(mymodel)
```
Expand Down