Made some corrections, and split up the manual.tex to separate input …

….tex files to avoid merge conflicts in the future

doc/manual/contacts.tex

@@ -0,0 +1,22 @@
+If you have questions that go beyond this manual, there are a number of
+resources:
+\begin{itemize}
+\item For questions about the source code of \dftfe{}, portability, installation,
+ etc., use the \dftfe{} development mailing list at
+ \url{[email protected]}.
+
+\item \dftfe{} is primarily based on the deal.II library (the dependency
+ on PETSc, SLEPc, and p4est are primarily through deal.II, and not directly
+ visible in the \dftfe{} source code). If you have particular questions
+ about deal.II, contact
+ the mailing lists described at \url{https://www.dealii.org/mail.html}.
+
+\item If you have specific questions about \dftfe{} that are not suitable
+ for public and archived mailing lists, you can contact the
+ primary developers and mentors:
+ \begin{itemize}
+ \item Phani Motamarri: \url{[email protected]}.
+ \item Sambit Das: \url{[email protected]}.
+ \item Vikram Gavini: \url{[email protected]} (Mentor).
+ \end{itemize}
+\end{itemize}

doc/manual/contributing.tex

@@ -0,0 +1 @@
+Discussion on how to contribute to \dftfe{} and the expected contributing standards go here.

doc/manual/formulation.tex

@@ -0,0 +1 @@
+Formulation...

doc/manual/futurePlans.tex

@@ -0,0 +1 @@
+Future plans go here...

doc/manual/installation.tex

@@ -0,0 +1 @@
+Installation instructions go here

doc/manual/intro.tex

@@ -0,0 +1,49 @@
+DFT-FE is a C++ code for material modeling from first principles using Kohn-Sham density functional theory.
+It is based on adaptive finite-element based methodologies and handles all-electron and pseudopotential calculations in the 
+same framework while accommodating arbitrary boundary conditions. dft-fe code builds on top of the deal.II library for everything 
+that has to do with finite elements, geometries, meshes, etc., and, through deal.II on p4est for parallel adaptive mesh handling.
+
+\subsection{Authors}
+\label{sec:authors}
+\dftfe{} is hosted by the \href{http:https://www-personal.umich.edu/~vikramg/}{Computational Materials Physics
+group at University of Michigan}, with Vikram Gavini, Associate Professor of Mechanical Engineering and Materials Science and Engineering, as
+the principal investigator broadly overseeing this effort. The code is maintained by a group of principal developers, 
+who manage the architecture of the code and the core functionalities. Developers with
+significant contributions to core functionalities and code architecture in the past who are 
+no longer active principal developers, are listed under principal developers emeriti. 
+A subset of the principal developers and mentors are administrators. Finally, all contributors who have
+contributed major parts of the DFT-FE code or sent fixes and small enhancements are listed
+under contributors. All the underlying lists are in alphabetical order. 
+
+\paragraph{Principal developers}
+\begin{itemize}
+ \item Sambit Das (University of Michigan, USA).
+ \item Phani Motamarri (University of Michigan, USA).
+\end{itemize}
+
+\paragraph{Prinicipal developers emeriti}
+\begin{itemize}
+ \item Krishnendu Ghosh (University of Michigan, USA).
+ \item Shiva Rudraraju (University of Wisconsin Madison, USA). 
+\end{itemize}
+
+\paragraph{Contributors}
+\begin{itemize}
+ \item Sambit Das (University of Michigan, USA).
+ \item Denis Davydov (University of Erlangen-Nuremberg, Germany).
+ \item Krishnendu Ghosh (University of Michigan, USA).
+ \item Phani Motamarri (University of Michigan, USA).
+ \item Shiva Rudraraju (University of Wisconsin Madison, USA). 
+\end{itemize}
+
+\paragraph{Mentors}
+\begin{itemize}
+ \item Vikram Gavini (University of Michigan, USA).
+\end{itemize}
+
+\subsection{Acknowledgments}
+The development of \dftfe{} has been funded ...
+
+
+
+\subsection{Referencing \dftfe{}}

doc/manual/manual.tex

@@ -66,7 +66,7 @@
 \begin{document}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%% START OF CIG MANUAL COVER TEMPLATE %%%
+%%% START OF DFT-FE MANUAL COVER TEMPLATE %%%
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % This should be pasted at the start of manuals and appropriate strings entered at locations indicated with FILL.
 % Be sure the TeX file includes the following packages.
@@ -136,30 +136,20 @@
 % keep the following line as is so that we can replace this using a script:
 0.5.0-pre %VERSION-INFO%
 \\\large(generated \today)\\
-{\Large Sambit Das\\Vikram Gavini\\Phani Motamarri\\}
+{\Large Sambit Das\\Vikram Gavini\\Phani Motamarri\\ Shiva Rudraraju\\}
 }
 
-%AUTHOR(S) & WEBSITE%
+%WEBSITE%
 \null
 \vspace{17em}
-\color{dark_grey}
-{\fontfamily{\sfdefault}\selectfont
-% FILL: author list
-% e.g. Author One\\Author Two\\Author Three\\
-% be sure to have a newline (\\) after the final author
-\large
-\noindent with contributions by: \\
- Shiva Rudraraju\\
-\vspace{1.0em}
-}
 
 {\noindent
 {\fontfamily{\sfdefault}\selectfont \href{https://dftfe.org}{website of dftfe}}
 }
 
-\begin{textblock*}{0in}(5.25in,-0.8in)
-\includegraphics[height=0.8in]{CoE-vert.png}
-\end{textblock*}
+%\begin{textblock*}{0in}(5.25in,-0.8in)
+%\includegraphics[height=0.8in]{CoE-vert.png}
+%\end{textblock*}
 
 %LINE%
 {\noindent
@@ -173,7 +163,7 @@
 \pagenumbering{arabic}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%% END OF CIG MANUAL COVER TEMPLATE %%%
+%%% END OF DFT-FE MANUAL COVER TEMPLATE %%%
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 \pagebreak
@@ -183,96 +173,35 @@
 \pagebreak
 
 \section{Introduction}
-DFT-FE is a C++ code for material modeling from first principles using Kohn-Sham density functional theory.
-It is based on adaptive finite-element based methodologies and handles all-electron and pseudopotential calculations in the 
-same framework while accommodating arbitrary boundary conditions. dft-fe code builds on top of the deal.II library for everything 
-that has to do with finite elements, geometries, meshes, etc., and, through deal.II on p4est for parallel adaptive mesh handling.
-
-\subsection{Authors}
-\label{sec:authors}
-\dftfe{} is hosted by the \href{http:https://www-personal.umich.edu/~vikramg/}{Computational Materials Physics
-group at University of Michigan}, with Vikram Gavini, Associate Professor of Mechanical Engineering and Materials Science and Engineering as
-the principal investigator. The code is maintained by a group of principal developers, 
-who manage the architecture of the code and the core functionalities. Developers with
-significant contributions to core functionalities and code architecture in the past who are 
-no longer active principal developers, are listed under principal developers emeriti. 
-A subset of the principal developers and mentors are administrators. Finally, all contributors who have
-contributed major parts of the DFT-FE code or sent fixes and small enhancements are listed
-under contributors. All the underlying lists are in alphabetical order. 
-
-\paragraph{Principal developers}
-\begin{itemize}
- \item Sambit Das (University of Michigan, USA).
- \item Phani Motamarri (University of Michigan, USA).
-\end{itemize}
-
-\paragraph{Prinicipal developers emeriti}
-\begin{itemize}
- \item Krishnendu Ghosh (University of Michigan, USA).
- \item Shiva Rudraraju (University of Wisconsin Madison, USA). 
-\end{itemize}
-
-\paragraph{Contributors}
-\begin{itemize}
- \item Sambit Das (University of Michigan, USA).
- \item Denis Davydov (University of Erlangen-Nuremberg, Germany).
- \item Krishnendu Ghosh (University of Michigan, USA).
- \item Phani Motamarri (University of Michigan, USA).
- \item Shiva Rudraraju (University of Wisconsin Madison, USA). 
-\end{itemize}
-
-\paragraph{Mentors}
-\begin{itemize}
- \item Vikram Gavini (University of Michigan, USA).
-\end{itemize}
-
-\subsection{Acknowledgments}
-The development of \dftfe{} has been funded ...
-
-
-
-\subsection{Referencing \dftfe{}}
+\label{sec:intro}
+\input{intro}
 
 \section{Overview of the formulation}
+\label{sec:intro}
+\input{formulation}
 
 \section{Installation}
+\label{sec:installation}
+\input{installation}
 
 \section{Running \dftfe}
+\label{sec:run}
+\input{rundftfe}
 
 \section{Contributing to \dftfe{}'s development}
-
+\label{sec:contributing}
+\input{contributing}
 
 
 \section{Future plans for \dftfe}
 \label{sec:future}
-
+\input{futurePlans}
 
 
 
 \section{Finding answers to more questions}
 \label{sec:questions-and-answers}
-If you have questions that go beyond this manual, there are a number of
-resources:
-\begin{itemize}
-\item For questions about the source code of \dftfe{}, portability, installation,
- etc., use the \dftfe{} development mailing list at
- \url{[email protected]}.
-
-\item \dftfe{} is primarily based on the deal.II library (the dependency
- on PETSc, SLEPc, and p4est are primarily through deal.II, and not directly
- visible in the \dftfe{} source code). If you have particular questions
- about deal.II, contact
- the mailing lists described at \url{https://www.dealii.org/mail.html}.
-
-\item If you have specific questions about \dftfe{} that are not suitable
- for public and archived mailing lists, you can contact the
- primary developers and mentors:
- \begin{itemize}
- \item Phani Motamarri: \url{[email protected]}.
- \item Sambit Das: \url{[email protected]}.
- \item Vikram Gavini: \url{[email protected]} (Mentor).
- \end{itemize}
-\end{itemize}
+\input{contacts}
 
 
 \appendix
@@ -311,6 +240,6 @@ \section{Run-time input parameters}
  \label{sec:runtime-parameter-index-full}
 }
 \printindex[prmindexfull]
-\end{itemize}
+\end{itemize}%Added this line as a temporary latex compilation error fix due to incorrect parameters.tex 
 
 \end{document}

doc/manual/rundftfe.tex

@@ -0,0 +1 @@
+Instructions on how to run \dftfe{} go here