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Virginia Tech Department of Biological Sciences
- Blacksburg VA
- aylwardlab.com
- @[email protected]
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virtree Public
Script for generating a binary alignment file in pseudo-FASTA fomat. Protein sequences from genomes are used as input.
Python UpdatedJul 15, 2024 -
viralrecall Public
Detection of NCLDV signatures in 'omic data
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AylwardDataViz Public
examples of data visualization, usually with 'omic or phylogenetic data
R UpdatedJun 3, 2024 -
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markerfinder-euk Public
This is a variation on the regular markerfinder script that can recover the three different eukaryotic RNAP variants
Python UpdatedApr 17, 2024 -
introduction to using kraken2 and recentrifuge to classify metagenomic reads against an NCBI database
UpdatedApr 10, 2024 -
ncldv_markersearch Public
A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.
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portalcasting Public
Forked from weecology/portalcastingSupport Package for Portal Predictions
R Other UpdatedMar 27, 2023 -
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pangenomics Public
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also includ…
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lastp_aai Public
script for calculating pairwise amino acid identity (AAI) between protein files
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