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adding a glossary endpoint which attempts to get patient-friendly descriptions from code. #120

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merged 7 commits into from
Mar 21, 2023
Merged

adding a glossary endpoint which attempts to get patient-friendly descriptions from code. #120

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2f415c2
adding a glossary endpoint which attempts to get patient-friendly des…
AnalogJ Mar 20, 2023
eec0da5
adding alias for ICD-10 codesystem.
AnalogJ Mar 20, 2023
bdbec67
working frontend lookup of Condition codes.
AnalogJ Mar 20, 2023
2371cda
Working (kinda). Couldnt find a way tto truncate text, so for now we'…
AnalogJ Mar 20, 2023
c387e62
conditional observation codes.
AnalogJ Mar 20, 2023
1c4799b
using caching mechanism for retrieving codes from MedlinePlus safely.
AnalogJ Mar 20, 2023
79d2e76
adding loading spinner for glossary lookup
AnalogJ Mar 21, 2023
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Working (kinda). Couldnt find a way tto truncate text, so for now we'… 
…re just adding scroll bars :(

Force IPV4 for medline api (ipv6 timesout).
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@AnalogJ
AnalogJ committed Mar 20, 2023
commit 2371cdaffc783bc9820318ce7e2a883d61e19032
16 changes: 15 additions & 1 deletion backend/pkg/web/handler/glossary.go
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
package handler

import (
"context"
"encoding/json"
"fmt"
"github.com/fastenhealth/fastenhealth-onprem/backend/pkg"
Expand All @@ -9,6 +10,7 @@ import (
"github.com/gin-gonic/gin"
"github.com/sirupsen/logrus"
"log"
"net"
"net/http"
"net/url"
"strings"
Expand Down Expand Up @@ -69,7 +71,19 @@ func GlossarySearchByCode(c *gin.Context) {
}

// Send the HTTP GET request to the API and retrieve the response
resp, err := http.Get(medlinePlusConnectEndpoint + "?" + params.Encode())
//TODO: when using IPV6 to communicate with MedlinePlus, we're getting timeouts. Force IPV4
var (
zeroDialer net.Dialer
httpClient = &http.Client{
Timeout: 10 * time.Second,
}
)
transport := http.DefaultTransport.(*http.Transport).Clone()
transport.DialContext = func(ctx context.Context, network, addr string) (net.Conn, error) {
return zeroDialer.DialContext(ctx, "tcp4", addr)
}
httpClient.Transport = transport
resp, err := httpClient.Get(medlinePlusConnectEndpoint + "?" + params.Encode())
if err != nil {
fmt.Println("Error sending request:", err)
return
Expand Down
5 changes: 5 additions & 0 deletions frontend/src/app/components/glossary-lookup/glossary-lookup.component.scss
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@@ -0,0 +1,5 @@
:host {
max-height:300px;
overflow-y:scroll;
display: inline-block;
}
1 change: 1 addition & 0 deletions frontend/src/app/components/glossary-lookup/glossary-lookup.component.ts
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Expand Up @@ -25,6 +25,7 @@ export class GlossaryLookupComponent implements OnInit {
this.url = result.url
this.source = result.publisher
this.description = this.sanitized.bypassSecurityTrustHtml(result.description)
// this.description = result.description
})
}

Expand Down
6 changes: 1 addition & 5 deletions frontend/src/app/components/report-labs-observation/report-labs-observation.component.html
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Expand Up @@ -49,11 +49,7 @@
<div class="col-6 bg-gray-100">
<div class="row">
<div class="col-12 mt-3">
<p>
<small>
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
</small>
</p>
<app-glossary-lookup [code]="observationCode" [codeSystem]="'http:https://loinc.org'"></app-glossary-lookup>
</div>

<div class="col-12">
Expand Down