GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-uni…

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

Making big AI models cheaper, easier, and scalable

Bioinformatics containers

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

This repository contains implementations and illustrative code to accompany DeepMind publications

GBS SNP Calling Reference Optional Pipeline

An end-to-end neural ad-hoc ranking pipeline.

DIA-NN - a fast and easy to use tool for processing data independent acquisition (DIA) proteomics data

差异表达基因分析平台

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

Updated implementation of the GSEA-P R application for modern R distributions

A collection of datasets of ML problem solving

This repository contains the website documentation for OpenSWATH.

SemI-SUpervised generative Autoencoder models for single cell data

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

An open source, low-code machine learning library in Python

High-quality circular representations of taxonomic and phylogenetic trees

A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences

The Sandboxie application

Genomics Workflows on AWS

Workflow Description Language (WDL) scripts for common vg workflows

Protein Interactions from Cross-linking

ProXL Web App -- Visualize and Share Protein Cross-linking Data

troposphere - Python library to create AWS CloudFormation descriptions