Infrastructure as code implementation of the seqeralabs/showcase on Seqera

Simple test framework for Nextflow pipelines

Nextflow training material

A DSL for data-driven computational pipelines

A best practices guide for Nextflow on Kubernetes

A flexible pipeline for complete analysis of bacterial genomes

Python package with helper tools for the nf-core community.

A curated collection of Nextflow implementation patterns

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A curated list of nextflow based pipelines

Nanopore demultiplexing, QC and alignment pipeline

The developer platform for on-demand cloud development environments to create software faster and more securely.

API para e-distribución (Endesa distribución)

SQL support plugin for Nextflow

Nextflow Tower CLI tool

This Google cloud function demonstrates how to take a serverless approach to automate execution of pipeline jobs on Nextflow Tower based on a event trigger. e.g In this example we are considering …

GitHub Action to launch a workflow using Nextflow Tower.

Nextflow workflow for the WALLABY science project

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Workflow management with Nextflow and nf-core

Luslab nextflow modules

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Nextflow Tower system

Identify and quantify MHC eluted peptides from mass spectrometry raw data

Testing building mulled containers for multi-requirement tools.

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control