zerenebatchR is an R utility for batch processing images in Zerene Stacker. Batch processing in Zerene Stacker requires you to already have the images you want to process organized into folders by stack. If you have many stacks, this can be an onerous task. zerenebatchR aims to simplify this process by automatically grouping images into folders using information supplied from a spreadsheet and creating the required batch file. zerenebatchR is not created or endorsed by the developers of Zerene Stacker.

zerenebatchR can be installed from GitHub as follows:

install.packages("remote")
remotes::install_github("https://github.com/ethanbass/zerenebatchR/")

Or install directly from my R Universe repo:

install.packages("zerenebatchR", repos="https://ethanbass.r-universe.dev/", type="source")

The function expand_zs_batch can be used to expand a data.frame containing the first and last file in a stack. This expanded data.frame can then be fed to the run_zs_batch function to stack images in Zerene Stacker. zerenebatchR automatically creates the folders of images that are required for batch image processing in Zerene Stacker and creates the batch script. For further details, please see the documentation by running ?zerenebatchR::run_zs_batch or ?zerenebatchR::expand_zs_batch from your R console.