Update to owlready0.45

ontopy/excelparser.py

@@ -551,15 +551,14 @@ def get_metadata_from_dataframe( # pylint: disable=too-many-locals,too-many-bra
 
  # Add versionInfo
  try:
- _add_literal(
- metadata,
- onto.metadata.versionInfo,
- "Ontology version Info",
- metadata=True,
- only_one=True,
+ name_list = _parse_literal(
+ metadata, "Ontology version Info", metadata=True
  )
+ onto.metadata.versionInfo.append(name_list[0])
  except AttributeError:
  pass
+
+ onto.set_version(onto.get_version())
  return onto, catalog
 
 

ontopy/ontology.py

@@ -97,7 +97,7 @@ def get_ontology(
  version of EMMO. Until first stable release
  emmo-inferred and emmo-development will be the same.
  OntologyClass: If given and `base_iri` doesn't correspond
- to an existing ontology, a new ontology is created of
+ an existing ontology, a new ontology is created of
  this Ontology subclass. Defaults to `ontopy.Ontology`.
  label_annotations: Sequence of label IRIs used for accessing
  entities in the ontology given that they are in the ontology.
@@ -871,6 +871,7 @@ def save(
  write_catalog_file=False,
  append_catalog=False,
  catalog_file="catalog-v001.xml",
+ keep_python_names=False,
  **kwargs,
  ) -> Path:
  """Writes the ontology to file.
@@ -933,6 +934,29 @@ def save(
  "'Known issues' section of the README."
  )
  )
+ if not keep_python_names:
+ ontocopy = self.copy()
+ ontocopy._del_data_triple_spod(
+ p=ontocopy._abbreviate(
+ "https://www.lesfleursdunormal.fr/static/_downloads/"
+ "owlready_ontology.owl#python_name"
+ )
+ )
+ returnpath = ontocopy.save(
+ filename=filename,
+ format=format,
+ dir=dir,
+ mkdir=mkdir,
+ overwrite=overwrite,
+ recursive=recursive,
+ squash=squash,
+ write_catalog_file=write_catalog_file,
+ append_catalog=append_catalog,
+ catalog_file=catalog_file,
+ keep_python_names=True,
+ )
+ return returnpath
+
  revmap = {value: key for key, value in FMAP.items()}
  if filename is None:
  if format:
@@ -984,6 +1008,7 @@ def save(
  recursive=False,
  squash=False,
  write_catalog_file=False,
+ keep_python_names=keep_python_names,
  **kwargs,
  )
 
@@ -1100,9 +1125,18 @@ def copy(self):
  recursive=True,
  write_catalog_file=True,
  mkdir=True,
+ keep_python_names=True,
  )
+ # copy all in dirname to new directory
+ # newdir = Path("/home/flb/projects/Team4.0/EMMOntoPy/temp/newonto")
+ # import shutil
+
+ # shutil.copytree(dirname, newdir)
+ # print(filename)
  ontology = get_ontology(filename).load()
  ontology.name = self.name
+ ontology.iri = self.iri
+ ontology.base_iri = self.base_iri
  return ontology
 
  def get_imported_ontologies(self, recursive=False):

tests/test_excelparser/result_ontology/fromexcelonto.ttl

@@ -4,6 +4,7 @@
 @prefix owl: <https://www.w3.org/2002/07/owl#> .
 @prefix rdfs: <https://www.w3.org/2000/01/rdf-schema#> .
 @prefix skos: <https://www.w3.org/2004/02/skos/core#> .
+@prefix xsd: <https://www.w3.org/2001/XMLSchema#> .
 
 <https://emmo.info/emmo/domain/onto> a owl:Ontology ;
  dcterms:contributor "SINTEF"@en,
@@ -14,7 +15,8 @@
  dcterms:title "A test domain ontology"@en ;
  owl:imports <https://emmo.info/emmo>,
  <https://ontology.info/ontology> ;
- owl:versionInfo "0.01"@en .
+ owl:versionIRI <https://emmo.info/emmo/domain/0.01/onto> ;
+ owl:versionInfo "0.01"^^xsd:string .
 
 :EMMO_0264be35-e8ad-5b35-a1a3-84b37bde22d1 a owl:Class ;
  emmo:EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9 "Temporal pattern occurring in a time interval"@en ;

tests/test_excelparser/result_ontology/fromexcelonto_only_classes.ttl

@@ -4,6 +4,7 @@
 @prefix owl: <https://www.w3.org/2002/07/owl#> .
 @prefix rdfs: <https://www.w3.org/2000/01/rdf-schema#> .
 @prefix skos: <https://www.w3.org/2004/02/skos/core#> .
+@prefix xsd: <https://www.w3.org/2001/XMLSchema#> .
 
 <https://emmo.info/emmo/domain/onto> a owl:Ontology ;
  dcterms:contributor "SINTEF"@en,
@@ -14,7 +15,8 @@
  dcterms:title "A test domain ontology"@en ;
  owl:imports <https://emmo.info/emmo>,
  <https://ontology.info/ontology> ;
- owl:versionInfo "0.01"@en .
+ owl:versionIRI <https://emmo.info/emmo/domain/0.01/onto> ;
+ owl:versionInfo "0.01"^^xsd:string .
 
 :EMMO_0264be35-e8ad-5b35-a1a3-84b37bde22d1 a owl:Class ;
  emmo:EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9 "Temporal pattern occurring in a time interval"@en ;

tests/test_excelparser/test_excelparser.py

@@ -33,7 +33,18 @@ def test_excelparser(repo_dir: "Path") -> None:
  repo_dir / "tests" / "test_excelparser" / "onto_update.xlsx"
  )
  ontology, catalog, errors = create_ontology_from_excel(xlspath, force=True)
- # ontology.save("test.ttl") # used for printing new ontology when debugging
+ # ontology.save("test.ttl", keep_python_names=False) # used for printing new ontology when debugging
+ ontology._del_data_triple_spod(
+ p=ontology._abbreviate(
+ "https://www.lesfleursdunormal.fr/static/_downloads/"
+ "owlready_ontology.owl#python_name"
+ )
+ )
+
+ ontology.save(
+ "test.ttl", keep_python_names=True
+ ) # used for printing new ontology when debugging
+
  assert onto == ontology
  assert errors.keys() == {
  "already_defined",