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  1. CloneGrowthSimulation CloneGrowthSimulation Public

    Julia implementation of stochastic branching process for tumour growth and mutation simulations

    Jupyter Notebook 8 1

  2. liquidCNA liquidCNA Public

    R implementation of liquidCNA, a method for tracking emergent subclone dynamics in CNA data from longitudinal (liquid) biopsies

    Jupyter Notebook 5

  3. Random Random Public

    Repository for miscellaneous stuff.

    Python

  4. MathOnco/NeoPredPipe MathOnco/NeoPredPipe Public

    Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

    Python 106 28