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palm Public
Forked from standard-aaron/palmPolygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
Python UpdatedSep 26, 2024 -
ccr5_paper Public
Source code from the paper: "Tracing the evolutionary path of the CCR5delta32 deletion via ancient and modern genomes" (2023) medRxiv
R MIT License UpdatedSep 13, 2024 -
mesoneo_paper Public
Source code from the paper: "The Selection Landscape and Genetic Legacy of Ancient Eurasians" (2024) Nature
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ms_paper Public
Source code from the paper: "Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations" (2024) Nature
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refpanel Public
Pipeline to build a large human reference panel, using publicly available genomes
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AncestralPaths Public
Forked from AliPearson/AncestralPathsAncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestries to segments of chromosomes the decribe the path back throu…
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clues Public
Forked from standard-aaron/cluesCoalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
Python UpdatedAug 9, 2023 -
qpbrute Public
Heuristic search algorithm for fitting qpGraph models
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chicken_paper Public
Source code from the paper: "The biocultural origins and dispersal of domestic chickens" (2022) PNAS
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temporal-selection Public
Temporal selection exercises for PopGen21
R MIT License UpdatedJul 30, 2021 -
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ctvt_paper Public
Source code from the paper: "The evolutionary history of dogs in the Americas" (2018) Science
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rabbit_paper Public
Source code from the paper: "Rabbits and the Specious Origins of Domestication" (2018) TREE
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sulawesi_paper Public
Source code from the paper: "Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events" (2018) Proc. R. Soc. B
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