A tool suite for a simple, streamlined and rapid evaluation of variant callsets

Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell datasets

High accuracy RAG for answering questions from scientific documents with citations

Finding gene expression states in scRNA-seq data

Cell2Sentence: Teaching Large Language Models the Language of Biology

xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format

Convert bioinformatics file formats to Zarr

Porting of Protein Activity and Pathway Inference to single cell and Python.

Enhancing {ggplot2} plots with statistical analysis 📊📣

Low Coverage Calling of Genotypes

An end-to-end computational pipeline for large Perturb-seq screens

long read RNA-seq quantification

Visualizing transcript structure and annotation using ggplot2

Feature selection by EM test

Gene Expression Decomposition and Integration

An extremely fast Python package and project manager, written in Rust.

Structural variant discovery and genotyping from mapped PacBio HiFi data

Short-read sequencing tools

VCF compression tool

Curated list of project-based tutorials

A visualization grammar and GPU-accelerated toolkit for genomic data

R functions to use in the UK Biobank Research Analysis Platform (RAP)

Free, simple, and intuitive online database diagram editor and SQL generator.

Open Source alternative to Algolia + Pinecone and an Easier-to-Use alternative to ElasticSearch ⚡ 🔍 ✨ Fast, typo tolerant, in-memory fuzzy Search Engine for building delightful search experiences

Genome browser and variant annotation

Segmented HAPlotype Estimation and Imputation Tool