Bioinformatics I/O libraries in Rust

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

A python extension for quick access to bigWig and bigBed files

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Python 3 library with good support for both reading and writing VCF

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Splits fastq files evenly

A bioinformatics tool for working with modified bases

Build GUI for your Python program with JavaScript, HTML, and CSS

A Python wrapper for opening files and folders with the native file dialog.

Tool for plotting sequencing data along genomic coordinates.

Nextflow workflow to process WGS data

The modern, lightweight, performant, accessible and extensible drag & drop toolkit for React.

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

Enhancer hijacking detection using WGS + RNA-seq

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R

knowledge-based genotyping of cancer hotspots from the tumor BAM files